Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
SDCBPO00560 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC14.15□□□□□ -0.15
SDCBPO00560 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.15
SDCBPO00560 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
SDCBPO00560 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC14.14□□□□□ -0.15
SDCBPO00560 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SDCBPO00560 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC14.14□□□□□ -0.15
SDCBPO00560 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
SDCBPO00560 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
SDCBPO00560 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC14.14□□□□□ -0.15
SDCBPO00560 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC14.14□□□□□ -0.15
SDCBPO00560 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC14.14□□□□□ -0.15
SDCBPO00560 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
SDCBPO00560 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
SDCBPO00560 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SDCBPO00560 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC14.14□□□□□ -0.15
SDCBPO00560 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC14.14□□□□□ -0.15
SDCBPO00560 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
SDCBPO00560 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SDCBPO00560 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SDCBPO00560 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
SDCBPO00560 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SDCBPO00560 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
SDCBPO00560 EMD-201ENST00000369835 966 ntTSL 3 BASIC14.14□□□□□ -0.15
SDCBPO00560 RBM17P3-201ENST00000417687 1192 ntBASIC14.14□□□□□ -0.15
SDCBPO00560 LINC00982-205ENST00000420957 435 ntBASIC14.14□□□□□ -0.15
SDCBPO00560 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
SDCBPO00560 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC14.14□□□□□ -0.15
SDCBPO00560 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC14.14□□□□□ -0.15
SDCBPO00560 PRR29-207ENST00000580752 458 ntTSL 3 BASIC14.14□□□□□ -0.15
SDCBPO00560 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
SDCBPO00560 LINC01711-201ENST00000598340 967 ntBASIC14.14□□□□□ -0.15
SDCBPO00560 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC14.14□□□□□ -0.15
SDCBPO00560 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SDCBPO00560 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC14.14□□□□□ -0.15
SDCBPO00560 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SDCBPO00560 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
SDCBPO00560 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SDCBPO00560 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC14.14□□□□□ -0.15
SDCBPO00560 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
SDCBPO00560 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
SDCBPO00560 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
SDCBPO00560 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC14.14□□□□□ -0.15
SDCBPO00560 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SDCBPO00560 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SDCBPO00560 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC14.14□□□□□ -0.15
SDCBPO00560 AC004817.3-201ENST00000602957 2129 ntBASIC14.14□□□□□ -0.15
SDCBPO00560 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
SDCBPO00560 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SDCBPO00560 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
SDCBPO00560 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC14.13□□□□□ -0.15
SDCBPO00560 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
SDCBPO00560 FOS-208ENST00000555686 1496 ntTSL 2 BASIC14.13□□□□□ -0.15
SDCBPO00560 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
SDCBPO00560 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
SDCBPO00560 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
SDCBPO00560 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC14.13□□□□□ -0.15
SDCBPO00560 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
SDCBPO00560 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
SDCBPO00560 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
SDCBPO00560 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
SDCBPO00560 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
SDCBPO00560 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
SDCBPO00560 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
SDCBPO00560 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
SDCBPO00560 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
SDCBPO00560 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
SDCBPO00560 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC14.13□□□□□ -0.15
SDCBPO00560 KRT18P31-201ENST00000506277 1292 ntBASIC14.13□□□□□ -0.15
SDCBPO00560 NMU-205ENST00000511469 756 ntTSL 3 BASIC14.13□□□□□ -0.15
SDCBPO00560 AC106795.1-205ENST00000512851 1056 ntBASIC14.13□□□□□ -0.15
SDCBPO00560 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC14.13□□□□□ -0.15
SDCBPO00560 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC14.13□□□□□ -0.15
SDCBPO00560 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC14.13□□□□□ -0.15
SDCBPO00560 TPM1-218ENST00000559281 851 ntTSL 5 BASIC14.13□□□□□ -0.15
SDCBPO00560 AC091304.2-201ENST00000564639 760 ntBASIC14.13□□□□□ -0.15
SDCBPO00560 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC14.13□□□□□ -0.15
SDCBPO00560 CYB561-217ENST00000582997 877 ntTSL 5 BASIC14.13□□□□□ -0.15
SDCBPO00560 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC14.13□□□□□ -0.15
SDCBPO00560 AL139288.1-201ENST00000623748 933 ntBASIC14.13□□□□□ -0.15
SDCBPO00560 AC067930.6-201ENST00000623257 4947 ntBASIC14.13□□□□□ -0.15
SDCBPO00560 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC14.13□□□□□ -0.15
SDCBPO00560 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC14.13□□□□□ -0.15
SDCBPO00560 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
SDCBPO00560 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
SDCBPO00560 HNRNPRP1-201ENST00000453465 1695 ntBASIC14.13□□□□□ -0.15
SDCBPO00560 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC14.13□□□□□ -0.15
SDCBPO00560 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
SDCBPO00560 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
SDCBPO00560 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
SDCBPO00560 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
SDCBPO00560 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
SDCBPO00560 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
SDCBPO00560 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
SDCBPO00560 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC14.13□□□□□ -0.15
SDCBPO00560 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC14.12□□□□□ -0.15
SDCBPO00560 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
SDCBPO00560 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SDCBPO00560 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SDCBPO00560 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC14.12□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 63.3 ms