Protein–RNA interactions for Protein: Q9NXR1

NDE1, Nuclear distribution protein nudE homolog 1, humanhuman

Predictions only

Length 346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NDE1Q9NXR1 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
NDE1Q9NXR1 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC16.1■□□□□ 0.17
NDE1Q9NXR1 HARS-203ENST00000431330 1774 ntTSL 2 BASIC16.1■□□□□ 0.17
NDE1Q9NXR1 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
NDE1Q9NXR1 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
NDE1Q9NXR1 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC16.1■□□□□ 0.17
NDE1Q9NXR1 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
NDE1Q9NXR1 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC16.1■□□□□ 0.17
NDE1Q9NXR1 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC16.1■□□□□ 0.17
NDE1Q9NXR1 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
NDE1Q9NXR1 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
NDE1Q9NXR1 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC16.1■□□□□ 0.17
NDE1Q9NXR1 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC16.1■□□□□ 0.17
NDE1Q9NXR1 AC097637.2-201ENST00000624096 1997 ntBASIC16.1■□□□□ 0.17
NDE1Q9NXR1 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
NDE1Q9NXR1 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
NDE1Q9NXR1 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
NDE1Q9NXR1 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
NDE1Q9NXR1 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
NDE1Q9NXR1 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
NDE1Q9NXR1 NKTR-203ENST00000442970 646 ntTSL 2 BASIC16.1■□□□□ 0.17
NDE1Q9NXR1 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
NDE1Q9NXR1 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC16.1■□□□□ 0.17
NDE1Q9NXR1 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC16.1■□□□□ 0.17
NDE1Q9NXR1 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
NDE1Q9NXR1 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC16.1■□□□□ 0.17
NDE1Q9NXR1 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
NDE1Q9NXR1 KRT18P22-201ENST00000402024 1347 ntBASIC16.1■□□□□ 0.17
NDE1Q9NXR1 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC16.1■□□□□ 0.17
NDE1Q9NXR1 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC16.1■□□□□ 0.17
NDE1Q9NXR1 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
NDE1Q9NXR1 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
NDE1Q9NXR1 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
NDE1Q9NXR1 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC16.1■□□□□ 0.17
NDE1Q9NXR1 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC16.1■□□□□ 0.17
NDE1Q9NXR1 AC132938.5-201ENST00000624980 1813 ntBASIC16.1■□□□□ 0.17
NDE1Q9NXR1 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
NDE1Q9NXR1 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC16.1■□□□□ 0.17
NDE1Q9NXR1 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
NDE1Q9NXR1 ADAMTS14-202ENST00000373208 5269 ntAPPRIS P4 TSL 2 BASIC16.1■□□□□ 0.17
NDE1Q9NXR1 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
NDE1Q9NXR1 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
NDE1Q9NXR1 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC16.09■□□□□ 0.17
NDE1Q9NXR1 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
NDE1Q9NXR1 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC16.09■□□□□ 0.17
NDE1Q9NXR1 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
NDE1Q9NXR1 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
NDE1Q9NXR1 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
NDE1Q9NXR1 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
NDE1Q9NXR1 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
NDE1Q9NXR1 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
NDE1Q9NXR1 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC16.09■□□□□ 0.17
NDE1Q9NXR1 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
NDE1Q9NXR1 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC16.09■□□□□ 0.17
NDE1Q9NXR1 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
NDE1Q9NXR1 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
NDE1Q9NXR1 AP002414.1-201ENST00000391405 1147 ntBASIC16.09■□□□□ 0.17
NDE1Q9NXR1 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
NDE1Q9NXR1 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
NDE1Q9NXR1 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC16.09■□□□□ 0.17
NDE1Q9NXR1 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
NDE1Q9NXR1 AC008550.1-201ENST00000511500 884 ntBASIC16.09■□□□□ 0.17
NDE1Q9NXR1 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
NDE1Q9NXR1 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC16.09■□□□□ 0.17
NDE1Q9NXR1 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC16.09■□□□□ 0.17
NDE1Q9NXR1 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC16.09■□□□□ 0.17
NDE1Q9NXR1 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC16.09■□□□□ 0.17
NDE1Q9NXR1 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC16.09■□□□□ 0.17
NDE1Q9NXR1 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
NDE1Q9NXR1 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
NDE1Q9NXR1 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
NDE1Q9NXR1 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC16.09■□□□□ 0.17
NDE1Q9NXR1 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
NDE1Q9NXR1 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC16.09■□□□□ 0.17
NDE1Q9NXR1 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
NDE1Q9NXR1 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
NDE1Q9NXR1 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
NDE1Q9NXR1 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC16.09■□□□□ 0.17
NDE1Q9NXR1 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
NDE1Q9NXR1 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC16.09■□□□□ 0.17
NDE1Q9NXR1 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC16.09■□□□□ 0.17
NDE1Q9NXR1 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
NDE1Q9NXR1 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
NDE1Q9NXR1 Z83836.1-201ENST00000624605 1642 ntBASIC16.08■□□□□ 0.17
NDE1Q9NXR1 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.17
NDE1Q9NXR1 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
NDE1Q9NXR1 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.17
NDE1Q9NXR1 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
NDE1Q9NXR1 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.17
NDE1Q9NXR1 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.17
NDE1Q9NXR1 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
NDE1Q9NXR1 TCAF2P1-201ENST00000291129 2421 ntBASIC16.08■□□□□ 0.17
NDE1Q9NXR1 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
NDE1Q9NXR1 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
NDE1Q9NXR1 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC16.08■□□□□ 0.17
NDE1Q9NXR1 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
NDE1Q9NXR1 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
NDE1Q9NXR1 CICP13-201ENST00000422015 2789 ntBASIC16.08■□□□□ 0.16
NDE1Q9NXR1 AC138035.3-201ENST00000622706 2791 ntBASIC16.08■□□□□ 0.16
NDE1Q9NXR1 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 49.8 ms