Protein–RNA interactions for Protein: Q9HBJ7

USP29, Ubiquitin carboxyl-terminal hydrolase 29, humanhuman

Predictions only

Length 922 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP29Q9HBJ7 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
USP29Q9HBJ7 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
USP29Q9HBJ7 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
USP29Q9HBJ7 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
USP29Q9HBJ7 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC17.07■□□□□ 0.32
USP29Q9HBJ7 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
USP29Q9HBJ7 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
USP29Q9HBJ7 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC17.07■□□□□ 0.32
USP29Q9HBJ7 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC17.07■□□□□ 0.32
USP29Q9HBJ7 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC17.07■□□□□ 0.32
USP29Q9HBJ7 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
USP29Q9HBJ7 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
USP29Q9HBJ7 PMS2P2-201ENST00000425039 1128 ntBASIC17.07■□□□□ 0.32
USP29Q9HBJ7 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
USP29Q9HBJ7 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
USP29Q9HBJ7 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC17.07■□□□□ 0.32
USP29Q9HBJ7 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC17.07■□□□□ 0.32
USP29Q9HBJ7 AP001350.2-201ENST00000625104 1094 ntBASIC17.07■□□□□ 0.32
USP29Q9HBJ7 AC134684.3-201ENST00000641758 218 ntBASIC17.07■□□□□ 0.32
USP29Q9HBJ7 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
USP29Q9HBJ7 SLC9A3P2-201ENST00000447821 2021 ntBASIC17.07■□□□□ 0.32
USP29Q9HBJ7 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
USP29Q9HBJ7 AGK-211ENST00000629555 2765 ntTSL 5 BASIC17.07■□□□□ 0.32
USP29Q9HBJ7 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
USP29Q9HBJ7 AL596087.1-201ENST00000400979 1969 ntBASIC17.07■□□□□ 0.32
USP29Q9HBJ7 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
USP29Q9HBJ7 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC17.07■□□□□ 0.32
USP29Q9HBJ7 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC17.07■□□□□ 0.32
USP29Q9HBJ7 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
USP29Q9HBJ7 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
USP29Q9HBJ7 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC17.06■□□□□ 0.32
USP29Q9HBJ7 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC17.06■□□□□ 0.32
USP29Q9HBJ7 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
USP29Q9HBJ7 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC17.06■□□□□ 0.32
USP29Q9HBJ7 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC17.06■□□□□ 0.32
USP29Q9HBJ7 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
USP29Q9HBJ7 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
USP29Q9HBJ7 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
USP29Q9HBJ7 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC17.06■□□□□ 0.32
USP29Q9HBJ7 PCGF3-213ENST00000620529 1899 ntBASIC17.06■□□□□ 0.32
USP29Q9HBJ7 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC17.06■□□□□ 0.32
USP29Q9HBJ7 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
USP29Q9HBJ7 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC17.06■□□□□ 0.32
USP29Q9HBJ7 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
USP29Q9HBJ7 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC17.06■□□□□ 0.32
USP29Q9HBJ7 CRYGEP-201ENST00000412192 528 ntBASIC17.06■□□□□ 0.32
USP29Q9HBJ7 PRSS29P-201ENST00000440800 595 ntBASIC17.06■□□□□ 0.32
USP29Q9HBJ7 AP006288.1-201ENST00000446065 395 ntBASIC17.06■□□□□ 0.32
USP29Q9HBJ7 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC17.06■□□□□ 0.32
USP29Q9HBJ7 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC17.06■□□□□ 0.32
USP29Q9HBJ7 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC17.06■□□□□ 0.32
USP29Q9HBJ7 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC17.06■□□□□ 0.32
USP29Q9HBJ7 COX5A-206ENST00000568783 571 ntTSL 3 BASIC17.06■□□□□ 0.32
USP29Q9HBJ7 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
USP29Q9HBJ7 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
USP29Q9HBJ7 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC17.06■□□□□ 0.32
USP29Q9HBJ7 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
USP29Q9HBJ7 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC17.06■□□□□ 0.32
USP29Q9HBJ7 AC010654.1-201ENST00000615722 808 ntBASIC17.06■□□□□ 0.32
USP29Q9HBJ7 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
USP29Q9HBJ7 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC17.06■□□□□ 0.32
USP29Q9HBJ7 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
USP29Q9HBJ7 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
USP29Q9HBJ7 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
USP29Q9HBJ7 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
USP29Q9HBJ7 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
USP29Q9HBJ7 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC17.06■□□□□ 0.32
USP29Q9HBJ7 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC17.06■□□□□ 0.32
USP29Q9HBJ7 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
USP29Q9HBJ7 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
USP29Q9HBJ7 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC17.05■□□□□ 0.32
USP29Q9HBJ7 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
USP29Q9HBJ7 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
USP29Q9HBJ7 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
USP29Q9HBJ7 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
USP29Q9HBJ7 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
USP29Q9HBJ7 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC17.05■□□□□ 0.32
USP29Q9HBJ7 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
USP29Q9HBJ7 LINC01144-201ENST00000626198 1710 ntBASIC17.05■□□□□ 0.32
USP29Q9HBJ7 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
USP29Q9HBJ7 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
USP29Q9HBJ7 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC17.05■□□□□ 0.32
USP29Q9HBJ7 AC008741.2-201ENST00000612792 3115 ntBASIC17.05■□□□□ 0.32
USP29Q9HBJ7 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
USP29Q9HBJ7 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC17.05■□□□□ 0.32
USP29Q9HBJ7 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC17.05■□□□□ 0.32
USP29Q9HBJ7 AC211486.1-202ENST00000416371 468 ntBASIC17.05■□□□□ 0.32
USP29Q9HBJ7 ATP6V0CP3-201ENST00000417255 467 ntBASIC17.05■□□□□ 0.32
USP29Q9HBJ7 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC17.05■□□□□ 0.32
USP29Q9HBJ7 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC17.05■□□□□ 0.32
USP29Q9HBJ7 AC211476.1-201ENST00000503899 468 ntBASIC17.05■□□□□ 0.32
USP29Q9HBJ7 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC17.05■□□□□ 0.32
USP29Q9HBJ7 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC17.05■□□□□ 0.32
USP29Q9HBJ7 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
USP29Q9HBJ7 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC17.05■□□□□ 0.32
USP29Q9HBJ7 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
USP29Q9HBJ7 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
USP29Q9HBJ7 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
USP29Q9HBJ7 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC17.05■□□□□ 0.32
USP29Q9HBJ7 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC17.05■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms