Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PAAF1Q9BRP4 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
PAAF1Q9BRP4 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PAAF1Q9BRP4 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
PAAF1Q9BRP4 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PAAF1Q9BRP4 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
PAAF1Q9BRP4 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC17.55■□□□□ 0.4
PAAF1Q9BRP4 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PAAF1Q9BRP4 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
PAAF1Q9BRP4 CETN4P-206ENST00000642099 2168 ntBASIC17.55■□□□□ 0.4
PAAF1Q9BRP4 PCGF3-213ENST00000620529 1899 ntBASIC17.55■□□□□ 0.4
PAAF1Q9BRP4 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC17.55■□□□□ 0.4
PAAF1Q9BRP4 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PAAF1Q9BRP4 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC17.55■□□□□ 0.4
PAAF1Q9BRP4 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC17.55■□□□□ 0.4
PAAF1Q9BRP4 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PAAF1Q9BRP4 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
PAAF1Q9BRP4 GOLGA6L11P-201ENST00000417252 1298 ntBASIC17.55■□□□□ 0.4
PAAF1Q9BRP4 AC009477.1-201ENST00000452936 217 ntBASIC17.55■□□□□ 0.4
PAAF1Q9BRP4 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
PAAF1Q9BRP4 HLA-J-202ENST00000469281 1241 ntBASIC17.55■□□□□ 0.4
PAAF1Q9BRP4 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC17.55■□□□□ 0.4
PAAF1Q9BRP4 AC009407.1-201ENST00000568958 598 ntBASIC17.55■□□□□ 0.4
PAAF1Q9BRP4 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC17.55■□□□□ 0.4
PAAF1Q9BRP4 AL844908.2-201ENST00000609461 460 ntBASIC17.55■□□□□ 0.4
PAAF1Q9BRP4 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PAAF1Q9BRP4 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC17.55■□□□□ 0.4
PAAF1Q9BRP4 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
PAAF1Q9BRP4 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
PAAF1Q9BRP4 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC17.55■□□□□ 0.4
PAAF1Q9BRP4 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
PAAF1Q9BRP4 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC17.55■□□□□ 0.4
PAAF1Q9BRP4 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC17.55■□□□□ 0.4
PAAF1Q9BRP4 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
PAAF1Q9BRP4 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
PAAF1Q9BRP4 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PAAF1Q9BRP4 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC17.55■□□□□ 0.4
PAAF1Q9BRP4 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PAAF1Q9BRP4 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC17.54■□□□□ 0.4
PAAF1Q9BRP4 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PAAF1Q9BRP4 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PAAF1Q9BRP4 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
PAAF1Q9BRP4 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC17.54■□□□□ 0.4
PAAF1Q9BRP4 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PAAF1Q9BRP4 AC106886.4-201ENST00000623557 2502 ntBASIC17.54■□□□□ 0.4
PAAF1Q9BRP4 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
PAAF1Q9BRP4 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC17.54■□□□□ 0.4
PAAF1Q9BRP4 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
PAAF1Q9BRP4 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
PAAF1Q9BRP4 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
PAAF1Q9BRP4 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
PAAF1Q9BRP4 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
PAAF1Q9BRP4 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
PAAF1Q9BRP4 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
PAAF1Q9BRP4 AL080243.2-201ENST00000418783 582 ntBASIC17.54■□□□□ 0.4
PAAF1Q9BRP4 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
PAAF1Q9BRP4 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC17.54■□□□□ 0.4
PAAF1Q9BRP4 CCDC74BP1-201ENST00000508880 1123 ntBASIC17.54■□□□□ 0.4
PAAF1Q9BRP4 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC17.54■□□□□ 0.4
PAAF1Q9BRP4 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC17.54■□□□□ 0.4
PAAF1Q9BRP4 AF228730.6-201ENST00000641497 218 ntBASIC17.54■□□□□ 0.4
PAAF1Q9BRP4 AC084121.3-201ENST00000641716 218 ntBASIC17.54■□□□□ 0.4
PAAF1Q9BRP4 AC105233.6-201ENST00000642093 218 ntBASIC17.54■□□□□ 0.4
PAAF1Q9BRP4 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PAAF1Q9BRP4 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
PAAF1Q9BRP4 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
PAAF1Q9BRP4 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
PAAF1Q9BRP4 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC17.54■□□□□ 0.4
PAAF1Q9BRP4 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
PAAF1Q9BRP4 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC17.54■□□□□ 0.4
PAAF1Q9BRP4 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC17.54■□□□□ 0.4
PAAF1Q9BRP4 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC17.54■□□□□ 0.4
PAAF1Q9BRP4 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
PAAF1Q9BRP4 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PAAF1Q9BRP4 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
PAAF1Q9BRP4 HCG11-201ENST00000411553 5696 ntBASIC17.54■□□□□ 0.4
PAAF1Q9BRP4 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC17.53■□□□□ 0.4
PAAF1Q9BRP4 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
PAAF1Q9BRP4 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PAAF1Q9BRP4 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
PAAF1Q9BRP4 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC17.53■□□□□ 0.4
PAAF1Q9BRP4 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PAAF1Q9BRP4 GGT3P-204ENST00000453783 1664 ntBASIC17.53■□□□□ 0.4
PAAF1Q9BRP4 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
PAAF1Q9BRP4 GSAP-205ENST00000430584 600 ntTSL 5 BASIC17.53■□□□□ 0.4
PAAF1Q9BRP4 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC17.53■□□□□ 0.4
PAAF1Q9BRP4 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PAAF1Q9BRP4 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
PAAF1Q9BRP4 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC17.53■□□□□ 0.4
PAAF1Q9BRP4 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC17.53■□□□□ 0.4
PAAF1Q9BRP4 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
PAAF1Q9BRP4 AL079307.3-201ENST00000556114 283 ntBASIC17.53■□□□□ 0.4
PAAF1Q9BRP4 AC008738.7-201ENST00000609744 511 ntBASIC17.53■□□□□ 0.4
PAAF1Q9BRP4 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC17.53■□□□□ 0.4
PAAF1Q9BRP4 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC17.53■□□□□ 0.4
PAAF1Q9BRP4 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
PAAF1Q9BRP4 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PAAF1Q9BRP4 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC17.53■□□□□ 0.4
PAAF1Q9BRP4 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
PAAF1Q9BRP4 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms