Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 AC244669.2-201ENST00000612320 853 ntBASIC14.24□□□□□ -0.13
COL12A1Q99715 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
COL12A1Q99715 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
COL12A1Q99715 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
COL12A1Q99715 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
COL12A1Q99715 KRT18P55-202ENST00000578578 1546 ntBASIC14.24□□□□□ -0.13
COL12A1Q99715 ZNF815P-201ENST00000421890 1352 ntTSL 2 BASIC14.24□□□□□ -0.13
COL12A1Q99715 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
COL12A1Q99715 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
COL12A1Q99715 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC14.24□□□□□ -0.13
COL12A1Q99715 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC14.24□□□□□ -0.13
COL12A1Q99715 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC14.24□□□□□ -0.13
COL12A1Q99715 HYMAI-201ENST00000635591 3347 ntBASIC14.24□□□□□ -0.13
COL12A1Q99715 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
COL12A1Q99715 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC14.24□□□□□ -0.13
COL12A1Q99715 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
COL12A1Q99715 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC14.23□□□□□ -0.13
COL12A1Q99715 UFM1-202ENST00000379649 846 ntTSL 4 BASIC14.23□□□□□ -0.13
COL12A1Q99715 DLGAP4-AS1-202ENST00000433238 593 ntTSL 3 BASIC14.23□□□□□ -0.13
COL12A1Q99715 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
COL12A1Q99715 AC008267.1-201ENST00000474858 1069 ntBASIC14.23□□□□□ -0.13
COL12A1Q99715 IMP3P2-201ENST00000489760 475 ntBASIC14.23□□□□□ -0.13
COL12A1Q99715 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC14.23□□□□□ -0.13
COL12A1Q99715 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC14.23□□□□□ -0.13
COL12A1Q99715 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC14.23□□□□□ -0.13
COL12A1Q99715 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC14.23□□□□□ -0.13
COL12A1Q99715 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC14.23□□□□□ -0.13
COL12A1Q99715 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
COL12A1Q99715 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
COL12A1Q99715 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC14.23□□□□□ -0.13
COL12A1Q99715 EML3-217ENST00000531557 2509 ntTSL 5 BASIC14.23□□□□□ -0.13
COL12A1Q99715 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
COL12A1Q99715 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
COL12A1Q99715 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
COL12A1Q99715 GEMIN7-202ENST00000391951 716 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
COL12A1Q99715 HNRNPA1P32-201ENST00000396326 963 ntBASIC14.23□□□□□ -0.13
COL12A1Q99715 SPDYE17-201ENST00000412399 783 ntBASIC14.23□□□□□ -0.13
COL12A1Q99715 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC14.23□□□□□ -0.13
COL12A1Q99715 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC14.23□□□□□ -0.13
COL12A1Q99715 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
COL12A1Q99715 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC14.23□□□□□ -0.13
COL12A1Q99715 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
COL12A1Q99715 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
COL12A1Q99715 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC14.23□□□□□ -0.13
COL12A1Q99715 IMPDH1P4-201ENST00000445028 1534 ntBASIC14.23□□□□□ -0.13
COL12A1Q99715 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
COL12A1Q99715 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
COL12A1Q99715 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
COL12A1Q99715 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
COL12A1Q99715 PSME1-201ENST00000206451 1006 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
COL12A1Q99715 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
COL12A1Q99715 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC14.23□□□□□ -0.13
COL12A1Q99715 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
COL12A1Q99715 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
COL12A1Q99715 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC14.23□□□□□ -0.13
COL12A1Q99715 AC010323.1-201ENST00000598884 580 ntAPPRIS P1 TSL 4 BASIC14.23□□□□□ -0.13
COL12A1Q99715 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC14.23□□□□□ -0.13
COL12A1Q99715 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
COL12A1Q99715 DLG1-AS1-202ENST00000430666 1694 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
COL12A1Q99715 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC14.22□□□□□ -0.13
COL12A1Q99715 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC14.22□□□□□ -0.13
COL12A1Q99715 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
COL12A1Q99715 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC14.22□□□□□ -0.13
COL12A1Q99715 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
COL12A1Q99715 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC14.22□□□□□ -0.13
COL12A1Q99715 SYCN-201ENST00000318438 573 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
COL12A1Q99715 EPDR1-203ENST00000425345 947 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
COL12A1Q99715 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC14.22□□□□□ -0.13
COL12A1Q99715 AC134698.3-201ENST00000523880 214 ntBASIC14.22□□□□□ -0.13
COL12A1Q99715 TMBIM4-205ENST00000535812 766 ntTSL 4 BASIC14.22□□□□□ -0.13
COL12A1Q99715 PTP4A1P2-201ENST00000546033 454 ntBASIC14.22□□□□□ -0.13
COL12A1Q99715 TGIF1-218ENST00000551402 1089 ntTSL 2 BASIC14.22□□□□□ -0.13
COL12A1Q99715 TMBIM4-212ENST00000556010 610 ntTSL 5 BASIC14.22□□□□□ -0.13
COL12A1Q99715 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
COL12A1Q99715 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
COL12A1Q99715 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC14.22□□□□□ -0.13
COL12A1Q99715 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
COL12A1Q99715 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC14.22□□□□□ -0.13
COL12A1Q99715 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
COL12A1Q99715 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
COL12A1Q99715 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC14.22□□□□□ -0.13
COL12A1Q99715 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC14.22□□□□□ -0.13
COL12A1Q99715 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
COL12A1Q99715 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
COL12A1Q99715 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
COL12A1Q99715 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC14.22□□□□□ -0.13
COL12A1Q99715 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC14.22□□□□□ -0.13
COL12A1Q99715 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
COL12A1Q99715 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
COL12A1Q99715 AC005077.2-201ENST00000449786 690 ntBASIC14.22□□□□□ -0.13
COL12A1Q99715 KRT18P66-201ENST00000452970 1269 ntBASIC14.22□□□□□ -0.13
COL12A1Q99715 HNRNPA1P13-201ENST00000510646 963 ntBASIC14.22□□□□□ -0.13
COL12A1Q99715 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC14.22□□□□□ -0.13
COL12A1Q99715 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
COL12A1Q99715 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC14.22□□□□□ -0.13
COL12A1Q99715 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
COL12A1Q99715 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
COL12A1Q99715 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
COL12A1Q99715 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
COL12A1Q99715 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 47.6 ms