Protein–RNA interactions for Protein: Q96K76

USP47, Ubiquitin carboxyl-terminal hydrolase 47, humanhuman

Predictions only

Length 1,375 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP47Q96K76 AL662844.4-201ENST00000606367 2838 ntBASIC23.03■■□□□ 1.28
USP47Q96K76 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC23.03■■□□□ 1.28
USP47Q96K76 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC23.03■■□□□ 1.28
USP47Q96K76 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC23.03■■□□□ 1.28
USP47Q96K76 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
USP47Q96K76 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC23.03■■□□□ 1.28
USP47Q96K76 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
USP47Q96K76 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC23.03■■□□□ 1.28
USP47Q96K76 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC23.03■■□□□ 1.28
USP47Q96K76 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC23.03■■□□□ 1.28
USP47Q96K76 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
USP47Q96K76 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
USP47Q96K76 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC23.03■■□□□ 1.28
USP47Q96K76 AL592424.1-201ENST00000563624 1536 ntBASIC23.03■■□□□ 1.28
USP47Q96K76 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
USP47Q96K76 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC23.03■■□□□ 1.28
USP47Q96K76 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC23.03■■□□□ 1.28
USP47Q96K76 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC23.03■■□□□ 1.28
USP47Q96K76 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC23.03■■□□□ 1.28
USP47Q96K76 HTR7P1-202ENST00000624664 4411 ntBASIC23.03■■□□□ 1.28
USP47Q96K76 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
USP47Q96K76 AP3S2-216ENST00000617003 1561 ntBASIC23.03■■□□□ 1.28
USP47Q96K76 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC23.03■■□□□ 1.28
USP47Q96K76 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC23.03■■□□□ 1.28
USP47Q96K76 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
USP47Q96K76 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC23.03■■□□□ 1.28
USP47Q96K76 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC23.03■■□□□ 1.28
USP47Q96K76 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC23.03■■□□□ 1.28
USP47Q96K76 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC23.03■■□□□ 1.28
USP47Q96K76 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC23.03■■□□□ 1.28
USP47Q96K76 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
USP47Q96K76 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC23.03■■□□□ 1.28
USP47Q96K76 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
USP47Q96K76 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC23.03■■□□□ 1.28
USP47Q96K76 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC23.03■■□□□ 1.28
USP47Q96K76 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
USP47Q96K76 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC23.03■■□□□ 1.28
USP47Q96K76 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC23.03■■□□□ 1.28
USP47Q96K76 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC23.02■■□□□ 1.28
USP47Q96K76 AC061975.2-201ENST00000581722 295 ntBASIC23.02■■□□□ 1.28
USP47Q96K76 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC23.02■■□□□ 1.28
USP47Q96K76 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC23.02■■□□□ 1.28
USP47Q96K76 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC23.02■■□□□ 1.28
USP47Q96K76 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
USP47Q96K76 BCL2-203ENST00000589955 5011 ntBASIC23.02■■□□□ 1.28
USP47Q96K76 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC23.02■■□□□ 1.28
USP47Q96K76 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
USP47Q96K76 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
USP47Q96K76 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
USP47Q96K76 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC23.02■■□□□ 1.28
USP47Q96K76 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
USP47Q96K76 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC23.02■■□□□ 1.28
USP47Q96K76 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC23.02■■□□□ 1.28
USP47Q96K76 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC23.02■■□□□ 1.28
USP47Q96K76 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC23.02■■□□□ 1.27
USP47Q96K76 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC23.01■■□□□ 1.27
USP47Q96K76 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC23.01■■□□□ 1.27
USP47Q96K76 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC23.01■■□□□ 1.27
USP47Q96K76 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC23.01■■□□□ 1.27
USP47Q96K76 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC23.01■■□□□ 1.27
USP47Q96K76 SLBP-205ENST00000488267 987 ntTSL 2 BASIC23.01■■□□□ 1.27
USP47Q96K76 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC23.01■■□□□ 1.27
USP47Q96K76 AL512356.2-201ENST00000546955 174 ntBASIC23.01■■□□□ 1.27
USP47Q96K76 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC23.01■■□□□ 1.27
USP47Q96K76 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
USP47Q96K76 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC23.01■■□□□ 1.27
USP47Q96K76 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
USP47Q96K76 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
USP47Q96K76 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC23.01■■□□□ 1.27
USP47Q96K76 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
USP47Q96K76 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
USP47Q96K76 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
USP47Q96K76 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
USP47Q96K76 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC23.01■■□□□ 1.27
USP47Q96K76 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC23.01■■□□□ 1.27
USP47Q96K76 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC23.01■■□□□ 1.27
USP47Q96K76 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC23.01■■□□□ 1.27
USP47Q96K76 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC23.01■■□□□ 1.27
USP47Q96K76 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC23.01■■□□□ 1.27
USP47Q96K76 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
USP47Q96K76 U82695.1-201ENST00000635752 1889 ntBASIC23.01■■□□□ 1.27
USP47Q96K76 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
USP47Q96K76 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
USP47Q96K76 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
USP47Q96K76 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
USP47Q96K76 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
USP47Q96K76 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
USP47Q96K76 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
USP47Q96K76 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC23.01■■□□□ 1.27
USP47Q96K76 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC23.01■■□□□ 1.27
USP47Q96K76 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC23.01■■□□□ 1.27
USP47Q96K76 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC23.01■■□□□ 1.27
USP47Q96K76 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC23.01■■□□□ 1.27
USP47Q96K76 BANF1P1-201ENST00000553684 263 ntBASIC23.01■■□□□ 1.27
USP47Q96K76 Z92544.3-201ENST00000624747 417 ntBASIC23.01■■□□□ 1.27
USP47Q96K76 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC23■■□□□ 1.27
USP47Q96K76 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
USP47Q96K76 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC23■■□□□ 1.27
USP47Q96K76 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC23■■□□□ 1.27
USP47Q96K76 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC23■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms