Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
VMP1Q96GC9 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC15.94■□□□□ 0.14
VMP1Q96GC9 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
VMP1Q96GC9 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
VMP1Q96GC9 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
VMP1Q96GC9 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC15.94■□□□□ 0.14
VMP1Q96GC9 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
VMP1Q96GC9 AC093525.9-201ENST00000624961 1746 ntBASIC15.94■□□□□ 0.14
VMP1Q96GC9 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC15.94■□□□□ 0.14
VMP1Q96GC9 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC15.94■□□□□ 0.14
VMP1Q96GC9 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
VMP1Q96GC9 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
VMP1Q96GC9 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
VMP1Q96GC9 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC15.93■□□□□ 0.14
VMP1Q96GC9 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC15.93■□□□□ 0.14
VMP1Q96GC9 EGFEM1P-202ENST00000431685 1563 ntBASIC15.93■□□□□ 0.14
VMP1Q96GC9 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
VMP1Q96GC9 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
VMP1Q96GC9 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC15.93■□□□□ 0.14
VMP1Q96GC9 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC15.93■□□□□ 0.14
VMP1Q96GC9 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC15.93■□□□□ 0.14
VMP1Q96GC9 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
VMP1Q96GC9 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC15.93■□□□□ 0.14
VMP1Q96GC9 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
VMP1Q96GC9 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC15.93■□□□□ 0.14
VMP1Q96GC9 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC15.93■□□□□ 0.14
VMP1Q96GC9 MIR940-201ENST00000401276 94 ntBASIC15.93■□□□□ 0.14
VMP1Q96GC9 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC15.93■□□□□ 0.14
VMP1Q96GC9 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC15.93■□□□□ 0.14
VMP1Q96GC9 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
VMP1Q96GC9 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC15.93■□□□□ 0.14
VMP1Q96GC9 RNA5SP416-201ENST00000516838 111 ntBASIC15.93■□□□□ 0.14
VMP1Q96GC9 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC15.93■□□□□ 0.14
VMP1Q96GC9 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC15.93■□□□□ 0.14
VMP1Q96GC9 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
VMP1Q96GC9 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC15.93■□□□□ 0.14
VMP1Q96GC9 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC15.93■□□□□ 0.14
VMP1Q96GC9 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC15.93■□□□□ 0.14
VMP1Q96GC9 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC15.93■□□□□ 0.14
VMP1Q96GC9 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
VMP1Q96GC9 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
VMP1Q96GC9 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC15.93■□□□□ 0.14
VMP1Q96GC9 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
VMP1Q96GC9 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
VMP1Q96GC9 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
VMP1Q96GC9 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
VMP1Q96GC9 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC15.93■□□□□ 0.14
VMP1Q96GC9 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC15.93■□□□□ 0.14
VMP1Q96GC9 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC15.93■□□□□ 0.14
VMP1Q96GC9 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
VMP1Q96GC9 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC15.93■□□□□ 0.14
VMP1Q96GC9 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC15.92■□□□□ 0.14
VMP1Q96GC9 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
VMP1Q96GC9 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
VMP1Q96GC9 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC15.92■□□□□ 0.14
VMP1Q96GC9 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
VMP1Q96GC9 AC116353.5-201ENST00000638148 1699 ntBASIC15.92■□□□□ 0.14
VMP1Q96GC9 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
VMP1Q96GC9 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
VMP1Q96GC9 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC15.92■□□□□ 0.14
VMP1Q96GC9 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
VMP1Q96GC9 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
VMP1Q96GC9 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC15.92■□□□□ 0.14
VMP1Q96GC9 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
VMP1Q96GC9 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC15.92■□□□□ 0.14
VMP1Q96GC9 AC023824.1-201ENST00000562945 2975 ntBASIC15.92■□□□□ 0.14
VMP1Q96GC9 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC15.92■□□□□ 0.14
VMP1Q96GC9 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC15.92■□□□□ 0.14
VMP1Q96GC9 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC15.92■□□□□ 0.14
VMP1Q96GC9 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
VMP1Q96GC9 AC132872.4-202ENST00000622924 2756 ntBASIC15.92■□□□□ 0.14
VMP1Q96GC9 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC15.92■□□□□ 0.14
VMP1Q96GC9 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC15.92■□□□□ 0.14
VMP1Q96GC9 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC15.92■□□□□ 0.14
VMP1Q96GC9 AC007967.2-201ENST00000432613 625 ntBASIC15.92■□□□□ 0.14
VMP1Q96GC9 VN2R19P-201ENST00000442399 1052 ntBASIC15.92■□□□□ 0.14
VMP1Q96GC9 PAWRP1-201ENST00000451083 565 ntBASIC15.92■□□□□ 0.14
VMP1Q96GC9 KRT18P3-201ENST00000451602 1288 ntBASIC15.92■□□□□ 0.14
VMP1Q96GC9 POLD2P1-201ENST00000511220 997 ntBASIC15.92■□□□□ 0.14
VMP1Q96GC9 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC15.92■□□□□ 0.14
VMP1Q96GC9 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC15.92■□□□□ 0.14
VMP1Q96GC9 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC15.92■□□□□ 0.14
VMP1Q96GC9 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC15.92■□□□□ 0.14
VMP1Q96GC9 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
VMP1Q96GC9 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC15.92■□□□□ 0.14
VMP1Q96GC9 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
VMP1Q96GC9 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
VMP1Q96GC9 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC15.92■□□□□ 0.14
VMP1Q96GC9 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
VMP1Q96GC9 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC15.92■□□□□ 0.14
VMP1Q96GC9 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC15.92■□□□□ 0.14
VMP1Q96GC9 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
VMP1Q96GC9 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
VMP1Q96GC9 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC15.92■□□□□ 0.14
VMP1Q96GC9 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC15.92■□□□□ 0.14
VMP1Q96GC9 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC15.92■□□□□ 0.14
VMP1Q96GC9 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC15.91■□□□□ 0.14
VMP1Q96GC9 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC15.91■□□□□ 0.14
VMP1Q96GC9 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
VMP1Q96GC9 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC15.91■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms