Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC16.76■□□□□ 0.27
CHFRQ96EP1 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CHFRQ96EP1 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
CHFRQ96EP1 OR6D1P-202ENST00000641007 5290 ntBASIC16.76■□□□□ 0.27
CHFRQ96EP1 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC16.76■□□□□ 0.27
CHFRQ96EP1 AL391256.1-201ENST00000443260 1855 ntBASIC16.76■□□□□ 0.27
CHFRQ96EP1 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC16.76■□□□□ 0.27
CHFRQ96EP1 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CHFRQ96EP1 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CHFRQ96EP1 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CHFRQ96EP1 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CHFRQ96EP1 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC16.76■□□□□ 0.27
CHFRQ96EP1 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CHFRQ96EP1 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CHFRQ96EP1 AC104794.3-201ENST00000566840 1248 ntBASIC16.76■□□□□ 0.27
CHFRQ96EP1 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CHFRQ96EP1 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
CHFRQ96EP1 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC16.76■□□□□ 0.27
CHFRQ96EP1 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CHFRQ96EP1 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CHFRQ96EP1 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CHFRQ96EP1 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CHFRQ96EP1 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CHFRQ96EP1 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC16.76■□□□□ 0.27
CHFRQ96EP1 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
CHFRQ96EP1 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CHFRQ96EP1 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC16.76■□□□□ 0.27
CHFRQ96EP1 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC16.76■□□□□ 0.27
CHFRQ96EP1 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CHFRQ96EP1 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CHFRQ96EP1 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
CHFRQ96EP1 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
CHFRQ96EP1 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
CHFRQ96EP1 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CHFRQ96EP1 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
CHFRQ96EP1 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC16.75■□□□□ 0.27
CHFRQ96EP1 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
CHFRQ96EP1 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CHFRQ96EP1 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CHFRQ96EP1 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC16.75■□□□□ 0.27
CHFRQ96EP1 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC16.75■□□□□ 0.27
CHFRQ96EP1 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CHFRQ96EP1 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CHFRQ96EP1 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC16.75■□□□□ 0.27
CHFRQ96EP1 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CHFRQ96EP1 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CHFRQ96EP1 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CHFRQ96EP1 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
CHFRQ96EP1 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CHFRQ96EP1 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC16.75■□□□□ 0.27
CHFRQ96EP1 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC16.75■□□□□ 0.27
CHFRQ96EP1 AC135586.1-201ENST00000539323 574 ntBASIC16.75■□□□□ 0.27
CHFRQ96EP1 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CHFRQ96EP1 AC061975.2-201ENST00000581722 295 ntBASIC16.75■□□□□ 0.27
CHFRQ96EP1 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC16.75■□□□□ 0.27
CHFRQ96EP1 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC16.75■□□□□ 0.27
CHFRQ96EP1 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC16.75■□□□□ 0.27
CHFRQ96EP1 CU639417.3-201ENST00000624240 1404 ntBASIC16.75■□□□□ 0.27
CHFRQ96EP1 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CHFRQ96EP1 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CHFRQ96EP1 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CHFRQ96EP1 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CHFRQ96EP1 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
CHFRQ96EP1 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CHFRQ96EP1 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CHFRQ96EP1 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CHFRQ96EP1 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC16.75■□□□□ 0.27
CHFRQ96EP1 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CHFRQ96EP1 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CHFRQ96EP1 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
CHFRQ96EP1 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC16.74■□□□□ 0.27
CHFRQ96EP1 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC16.74■□□□□ 0.27
CHFRQ96EP1 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CHFRQ96EP1 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC16.74■□□□□ 0.27
CHFRQ96EP1 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
CHFRQ96EP1 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
CHFRQ96EP1 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CHFRQ96EP1 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CHFRQ96EP1 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
CHFRQ96EP1 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CHFRQ96EP1 PGF-202ENST00000405431 666 ntTSL 5 BASIC16.74■□□□□ 0.27
CHFRQ96EP1 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC16.74■□□□□ 0.27
CHFRQ96EP1 RASL12-203ENST00000434605 982 ntTSL 2 BASIC16.74■□□□□ 0.27
CHFRQ96EP1 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC16.74■□□□□ 0.27
CHFRQ96EP1 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC16.74■□□□□ 0.27
CHFRQ96EP1 AL008721.1-201ENST00000609964 604 ntBASIC16.74■□□□□ 0.27
CHFRQ96EP1 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC16.74■□□□□ 0.27
CHFRQ96EP1 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
CHFRQ96EP1 AL139011.1-202ENST00000642063 584 ntBASIC16.74■□□□□ 0.27
CHFRQ96EP1 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC16.74■□□□□ 0.27
CHFRQ96EP1 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC16.74■□□□□ 0.27
CHFRQ96EP1 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
CHFRQ96EP1 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC16.74■□□□□ 0.27
CHFRQ96EP1 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC16.74■□□□□ 0.27
CHFRQ96EP1 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
CHFRQ96EP1 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC16.74■□□□□ 0.27
CHFRQ96EP1 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC16.74■□□□□ 0.27
CHFRQ96EP1 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CHFRQ96EP1 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CHFRQ96EP1 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC16.73■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 57.1 ms