Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC16.07■□□□□ 0.16
LMX1AQ8TE12 AL139011.1-202ENST00000642063 584 ntBASIC16.07■□□□□ 0.16
LMX1AQ8TE12 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
LMX1AQ8TE12 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
LMX1AQ8TE12 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC16.07■□□□□ 0.16
LMX1AQ8TE12 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
LMX1AQ8TE12 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
LMX1AQ8TE12 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC16.07■□□□□ 0.16
LMX1AQ8TE12 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC16.07■□□□□ 0.16
LMX1AQ8TE12 AL512652.2-201ENST00000625156 1716 ntBASIC16.07■□□□□ 0.16
LMX1AQ8TE12 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC16.07■□□□□ 0.16
LMX1AQ8TE12 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
LMX1AQ8TE12 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
LMX1AQ8TE12 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
LMX1AQ8TE12 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC16.07■□□□□ 0.16
LMX1AQ8TE12 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
LMX1AQ8TE12 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
LMX1AQ8TE12 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC16.07■□□□□ 0.16
LMX1AQ8TE12 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
LMX1AQ8TE12 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC16.07■□□□□ 0.16
LMX1AQ8TE12 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
LMX1AQ8TE12 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
LMX1AQ8TE12 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
LMX1AQ8TE12 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
LMX1AQ8TE12 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
LMX1AQ8TE12 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
LMX1AQ8TE12 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC16.06■□□□□ 0.16
LMX1AQ8TE12 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC16.06■□□□□ 0.16
LMX1AQ8TE12 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
LMX1AQ8TE12 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
LMX1AQ8TE12 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC16.06■□□□□ 0.16
LMX1AQ8TE12 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
LMX1AQ8TE12 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
LMX1AQ8TE12 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
LMX1AQ8TE12 COPE-202ENST00000349893 948 ntTSL 2 BASIC16.06■□□□□ 0.16
LMX1AQ8TE12 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
LMX1AQ8TE12 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
LMX1AQ8TE12 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC16.06■□□□□ 0.16
LMX1AQ8TE12 WBP2-203ENST00000433525 928 ntTSL 2 BASIC16.06■□□□□ 0.16
LMX1AQ8TE12 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC16.06■□□□□ 0.16
LMX1AQ8TE12 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC16.06■□□□□ 0.16
LMX1AQ8TE12 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC16.06■□□□□ 0.16
LMX1AQ8TE12 AC004233.3-201ENST00000607794 1269 ntBASIC16.06■□□□□ 0.16
LMX1AQ8TE12 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
LMX1AQ8TE12 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
LMX1AQ8TE12 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
LMX1AQ8TE12 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC16.06■□□□□ 0.16
LMX1AQ8TE12 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
LMX1AQ8TE12 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
LMX1AQ8TE12 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC16.06■□□□□ 0.16
LMX1AQ8TE12 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC16.06■□□□□ 0.16
LMX1AQ8TE12 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC16.06■□□□□ 0.16
LMX1AQ8TE12 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC16.06■□□□□ 0.16
LMX1AQ8TE12 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC16.06■□□□□ 0.16
LMX1AQ8TE12 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC16.06■□□□□ 0.16
LMX1AQ8TE12 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
LMX1AQ8TE12 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
LMX1AQ8TE12 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
LMX1AQ8TE12 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
LMX1AQ8TE12 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
LMX1AQ8TE12 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC16.05■□□□□ 0.16
LMX1AQ8TE12 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
LMX1AQ8TE12 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC16.05■□□□□ 0.16
LMX1AQ8TE12 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
LMX1AQ8TE12 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
LMX1AQ8TE12 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC16.05■□□□□ 0.16
LMX1AQ8TE12 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
LMX1AQ8TE12 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
LMX1AQ8TE12 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
LMX1AQ8TE12 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
LMX1AQ8TE12 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
LMX1AQ8TE12 VMO1-203ENST00000416307 712 ntTSL 2 BASIC16.05■□□□□ 0.16
LMX1AQ8TE12 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC16.05■□□□□ 0.16
LMX1AQ8TE12 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
LMX1AQ8TE12 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC16.05■□□□□ 0.16
LMX1AQ8TE12 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC16.05■□□□□ 0.16
LMX1AQ8TE12 AC012645.4-201ENST00000610691 1061 ntBASIC16.05■□□□□ 0.16
LMX1AQ8TE12 AC020765.3-201ENST00000613051 740 ntBASIC16.05■□□□□ 0.16
LMX1AQ8TE12 TEX28P1-201ENST00000613479 1221 ntBASIC16.05■□□□□ 0.16
LMX1AQ8TE12 TEX28P2-201ENST00000617764 1221 ntBASIC16.05■□□□□ 0.16
LMX1AQ8TE12 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
LMX1AQ8TE12 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
LMX1AQ8TE12 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC16.05■□□□□ 0.16
LMX1AQ8TE12 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
LMX1AQ8TE12 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
LMX1AQ8TE12 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
LMX1AQ8TE12 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
LMX1AQ8TE12 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
LMX1AQ8TE12 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
LMX1AQ8TE12 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC16.05■□□□□ 0.16
LMX1AQ8TE12 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
LMX1AQ8TE12 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
LMX1AQ8TE12 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
LMX1AQ8TE12 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
LMX1AQ8TE12 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
LMX1AQ8TE12 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
LMX1AQ8TE12 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
LMX1AQ8TE12 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
LMX1AQ8TE12 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
LMX1AQ8TE12 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms