Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC18.33■□□□□ 0.52
CCDC60Q8IWA6 AC097493.3-201ENST00000509725 367 ntBASIC18.33■□□□□ 0.52
CCDC60Q8IWA6 RNA5SP410-201ENST00000516285 106 ntBASIC18.33■□□□□ 0.52
CCDC60Q8IWA6 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC18.33■□□□□ 0.52
CCDC60Q8IWA6 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC18.33■□□□□ 0.52
CCDC60Q8IWA6 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CCDC60Q8IWA6 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC18.33■□□□□ 0.52
CCDC60Q8IWA6 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CCDC60Q8IWA6 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
CCDC60Q8IWA6 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
CCDC60Q8IWA6 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
CCDC60Q8IWA6 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CCDC60Q8IWA6 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC18.33■□□□□ 0.52
CCDC60Q8IWA6 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC18.33■□□□□ 0.52
CCDC60Q8IWA6 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
CCDC60Q8IWA6 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CCDC60Q8IWA6 AL589702.1-201ENST00000641229 1509 ntBASIC18.33■□□□□ 0.52
CCDC60Q8IWA6 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC18.33■□□□□ 0.52
CCDC60Q8IWA6 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CCDC60Q8IWA6 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
CCDC60Q8IWA6 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC18.32■□□□□ 0.52
CCDC60Q8IWA6 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC18.32■□□□□ 0.52
CCDC60Q8IWA6 FLJ38576-201ENST00000623820 2459 ntBASIC18.32■□□□□ 0.52
CCDC60Q8IWA6 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC60Q8IWA6 LTB4R2-202ENST00000528054 3092 ntBASIC18.32■□□□□ 0.52
CCDC60Q8IWA6 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC60Q8IWA6 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC60Q8IWA6 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC18.32■□□□□ 0.52
CCDC60Q8IWA6 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC60Q8IWA6 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC60Q8IWA6 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC60Q8IWA6 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC60Q8IWA6 FAM8A3P-201ENST00000427218 844 ntBASIC18.32■□□□□ 0.52
CCDC60Q8IWA6 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC18.32■□□□□ 0.52
CCDC60Q8IWA6 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC60Q8IWA6 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC18.32■□□□□ 0.52
CCDC60Q8IWA6 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC18.32■□□□□ 0.52
CCDC60Q8IWA6 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC18.32■□□□□ 0.52
CCDC60Q8IWA6 BANF1P1-201ENST00000553684 263 ntBASIC18.32■□□□□ 0.52
CCDC60Q8IWA6 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC60Q8IWA6 AL390754.1-201ENST00000619088 582 ntBASIC18.32■□□□□ 0.52
CCDC60Q8IWA6 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC18.32■□□□□ 0.52
CCDC60Q8IWA6 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC60Q8IWA6 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC60Q8IWA6 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC60Q8IWA6 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
CCDC60Q8IWA6 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC60Q8IWA6 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC18.32■□□□□ 0.52
CCDC60Q8IWA6 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC60Q8IWA6 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC60Q8IWA6 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC60Q8IWA6 RELA-227ENST00000615805 2236 ntTSL 5 BASIC18.31■□□□□ 0.52
CCDC60Q8IWA6 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC60Q8IWA6 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC60Q8IWA6 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC18.31■□□□□ 0.52
CCDC60Q8IWA6 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC18.31■□□□□ 0.52
CCDC60Q8IWA6 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC60Q8IWA6 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC60Q8IWA6 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC18.31■□□□□ 0.52
CCDC60Q8IWA6 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC60Q8IWA6 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC18.31■□□□□ 0.52
CCDC60Q8IWA6 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
CCDC60Q8IWA6 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC60Q8IWA6 IGHV3-42-201ENST00000520410 361 ntBASIC18.31■□□□□ 0.52
CCDC60Q8IWA6 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC18.31■□□□□ 0.52
CCDC60Q8IWA6 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC60Q8IWA6 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC18.31■□□□□ 0.52
CCDC60Q8IWA6 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC60Q8IWA6 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC60Q8IWA6 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC60Q8IWA6 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC60Q8IWA6 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC18.31■□□□□ 0.52
CCDC60Q8IWA6 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
CCDC60Q8IWA6 AC011676.5-201ENST00000624864 2660 ntBASIC18.31■□□□□ 0.52
CCDC60Q8IWA6 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC60Q8IWA6 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC60Q8IWA6 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC60Q8IWA6 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC60Q8IWA6 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC60Q8IWA6 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC18.3■□□□□ 0.52
CCDC60Q8IWA6 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
CCDC60Q8IWA6 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC18.3■□□□□ 0.52
CCDC60Q8IWA6 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC18.3■□□□□ 0.52
CCDC60Q8IWA6 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC60Q8IWA6 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC60Q8IWA6 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC60Q8IWA6 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC18.3■□□□□ 0.52
CCDC60Q8IWA6 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC18.3■□□□□ 0.52
CCDC60Q8IWA6 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC18.3■□□□□ 0.52
CCDC60Q8IWA6 AGGF1P2-201ENST00000426656 2106 ntBASIC18.3■□□□□ 0.52
CCDC60Q8IWA6 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC18.3■□□□□ 0.52
CCDC60Q8IWA6 SATB1-217ENST00000493952 626 ntTSL 3 BASIC18.3■□□□□ 0.52
CCDC60Q8IWA6 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC18.3■□□□□ 0.52
CCDC60Q8IWA6 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC60Q8IWA6 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC18.3■□□□□ 0.52
CCDC60Q8IWA6 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC60Q8IWA6 LINC02084-201ENST00000606069 1096 ntBASIC18.3■□□□□ 0.52
CCDC60Q8IWA6 SPDYE12P-201ENST00000618416 771 ntBASIC18.3■□□□□ 0.52
CCDC60Q8IWA6 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC18.3■□□□□ 0.52
CCDC60Q8IWA6 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms