Protein–RNA interactions for Protein: P57078

RIPK4, Receptor-interacting serine/threonine-protein kinase 4, humanhuman

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RIPK4P57078 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC21.62■■□□□ 1.05
RIPK4P57078 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
RIPK4P57078 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC21.62■■□□□ 1.05
RIPK4P57078 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
RIPK4P57078 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC21.62■■□□□ 1.05
RIPK4P57078 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC21.61■■□□□ 1.05
RIPK4P57078 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC21.61■■□□□ 1.05
RIPK4P57078 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
RIPK4P57078 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
RIPK4P57078 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
RIPK4P57078 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
RIPK4P57078 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC21.61■■□□□ 1.05
RIPK4P57078 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC21.61■■□□□ 1.05
RIPK4P57078 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
RIPK4P57078 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC21.61■■□□□ 1.05
RIPK4P57078 PCDHA14-201ENST00000506751 2298 ntBASIC21.61■■□□□ 1.05
RIPK4P57078 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
RIPK4P57078 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC21.61■■□□□ 1.05
RIPK4P57078 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
RIPK4P57078 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
RIPK4P57078 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC21.61■■□□□ 1.05
RIPK4P57078 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
RIPK4P57078 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
RIPK4P57078 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
RIPK4P57078 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
RIPK4P57078 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
RIPK4P57078 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
RIPK4P57078 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC21.61■■□□□ 1.05
RIPK4P57078 AC004449.1-201ENST00000564240 433 ntBASIC21.61■■□□□ 1.05
RIPK4P57078 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC21.61■■□□□ 1.05
RIPK4P57078 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC21.61■■□□□ 1.05
RIPK4P57078 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC21.61■■□□□ 1.05
RIPK4P57078 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
RIPK4P57078 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC21.61■■□□□ 1.05
RIPK4P57078 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
RIPK4P57078 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC21.61■■□□□ 1.05
RIPK4P57078 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
RIPK4P57078 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC21.6■■□□□ 1.05
RIPK4P57078 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
RIPK4P57078 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC21.6■■□□□ 1.05
RIPK4P57078 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
RIPK4P57078 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
RIPK4P57078 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC21.6■■□□□ 1.05
RIPK4P57078 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC21.6■■□□□ 1.05
RIPK4P57078 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
RIPK4P57078 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC21.6■■□□□ 1.05
RIPK4P57078 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC21.6■■□□□ 1.05
RIPK4P57078 SPDYE14P-201ENST00000442619 822 ntBASIC21.6■■□□□ 1.05
RIPK4P57078 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC21.6■■□□□ 1.05
RIPK4P57078 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC21.6■■□□□ 1.05
RIPK4P57078 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC21.6■■□□□ 1.05
RIPK4P57078 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC21.6■■□□□ 1.05
RIPK4P57078 AC026150.2-201ENST00000564693 1156 ntBASIC21.6■■□□□ 1.05
RIPK4P57078 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC21.6■■□□□ 1.05
RIPK4P57078 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC21.6■■□□□ 1.05
RIPK4P57078 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC21.6■■□□□ 1.05
RIPK4P57078 SPTSSB-204ENST00000617024 1292 ntBASIC21.6■■□□□ 1.05
RIPK4P57078 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC21.6■■□□□ 1.05
RIPK4P57078 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC21.6■■□□□ 1.05
RIPK4P57078 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC21.6■■□□□ 1.05
RIPK4P57078 GOLGA2P9-201ENST00000596977 1937 ntBASIC21.6■■□□□ 1.05
RIPK4P57078 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC21.6■■□□□ 1.05
RIPK4P57078 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC21.6■■□□□ 1.05
RIPK4P57078 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
RIPK4P57078 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC21.6■■□□□ 1.05
RIPK4P57078 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
RIPK4P57078 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
RIPK4P57078 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
RIPK4P57078 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
RIPK4P57078 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
RIPK4P57078 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC21.6■■□□□ 1.05
RIPK4P57078 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
RIPK4P57078 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
RIPK4P57078 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
RIPK4P57078 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
RIPK4P57078 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
RIPK4P57078 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC21.59■■□□□ 1.05
RIPK4P57078 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC21.59■■□□□ 1.05
RIPK4P57078 AC124067.4-201ENST00000519691 2379 ntBASIC21.59■■□□□ 1.05
RIPK4P57078 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
RIPK4P57078 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
RIPK4P57078 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC21.59■■□□□ 1.05
RIPK4P57078 RPL30-202ENST00000396070 440 ntTSL 2 BASIC21.59■■□□□ 1.05
RIPK4P57078 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC21.59■■□□□ 1.05
RIPK4P57078 PON3-203ENST00000427422 894 ntTSL 3 BASIC21.59■■□□□ 1.05
RIPK4P57078 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC21.59■■□□□ 1.05
RIPK4P57078 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC21.59■■□□□ 1.05
RIPK4P57078 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
RIPK4P57078 ALG1L8P-201ENST00000533887 760 ntBASIC21.59■■□□□ 1.05
RIPK4P57078 AC079328.2-201ENST00000561241 3354 ntBASIC21.59■■□□□ 1.05
RIPK4P57078 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC21.59■■□□□ 1.05
RIPK4P57078 AC005622.1-201ENST00000636801 1703 ntBASIC21.59■■□□□ 1.05
RIPK4P57078 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
RIPK4P57078 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC21.59■■□□□ 1.05
RIPK4P57078 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC21.59■■□□□ 1.05
RIPK4P57078 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC21.59■■□□□ 1.05
RIPK4P57078 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
RIPK4P57078 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
RIPK4P57078 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
RIPK4P57078 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 48.4 ms