Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC19.37■□□□□ 0.69
MRE11P49959 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
MRE11P49959 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC19.37■□□□□ 0.69
MRE11P49959 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
MRE11P49959 RASA4DP-201ENST00000460726 1199 ntBASIC19.37■□□□□ 0.69
MRE11P49959 FOSL1P1-201ENST00000511041 816 ntBASIC19.37■□□□□ 0.69
MRE11P49959 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
MRE11P49959 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC19.37■□□□□ 0.69
MRE11P49959 AC011498.5-201ENST00000592027 486 ntBASIC19.37■□□□□ 0.69
MRE11P49959 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC19.37■□□□□ 0.69
MRE11P49959 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
MRE11P49959 VPS51-217ENST00000639871 243 ntTSL 5 BASIC19.37■□□□□ 0.69
MRE11P49959 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
MRE11P49959 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
MRE11P49959 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
MRE11P49959 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
MRE11P49959 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
MRE11P49959 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
MRE11P49959 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC19.37■□□□□ 0.69
MRE11P49959 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC19.36■□□□□ 0.69
MRE11P49959 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
MRE11P49959 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
MRE11P49959 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC19.36■□□□□ 0.69
MRE11P49959 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
MRE11P49959 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
MRE11P49959 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
MRE11P49959 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC19.36■□□□□ 0.69
MRE11P49959 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
MRE11P49959 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
MRE11P49959 ILF2-202ENST00000368681 726 ntTSL 2 BASIC19.36■□□□□ 0.69
MRE11P49959 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC19.36■□□□□ 0.69
MRE11P49959 HLA-J-202ENST00000469281 1241 ntBASIC19.36■□□□□ 0.69
MRE11P49959 AC055717.3-201ENST00000622967 595 ntBASIC19.36■□□□□ 0.69
MRE11P49959 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC19.36■□□□□ 0.69
MRE11P49959 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC19.36■□□□□ 0.69
MRE11P49959 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC19.36■□□□□ 0.69
MRE11P49959 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
MRE11P49959 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
MRE11P49959 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
MRE11P49959 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC19.36■□□□□ 0.69
MRE11P49959 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
MRE11P49959 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
MRE11P49959 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
MRE11P49959 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
MRE11P49959 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
MRE11P49959 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC19.35■□□□□ 0.69
MRE11P49959 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC19.35■□□□□ 0.69
MRE11P49959 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
MRE11P49959 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
MRE11P49959 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
MRE11P49959 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
MRE11P49959 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC19.35■□□□□ 0.69
MRE11P49959 KRBOX4-202ENST00000344302 2774 ntAPPRIS ALT2 TSL 2 BASIC19.35■□□□□ 0.69
MRE11P49959 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
MRE11P49959 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC19.35■□□□□ 0.69
MRE11P49959 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
MRE11P49959 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC19.35■□□□□ 0.69
MRE11P49959 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
MRE11P49959 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
MRE11P49959 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
MRE11P49959 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
MRE11P49959 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
MRE11P49959 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
MRE11P49959 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
MRE11P49959 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
MRE11P49959 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
MRE11P49959 SPDYE15P-201ENST00000424157 909 ntBASIC19.35■□□□□ 0.69
MRE11P49959 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
MRE11P49959 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
MRE11P49959 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
MRE11P49959 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
MRE11P49959 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
MRE11P49959 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
MRE11P49959 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC19.35■□□□□ 0.69
MRE11P49959 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC19.35■□□□□ 0.69
MRE11P49959 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC19.35■□□□□ 0.69
MRE11P49959 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC19.35■□□□□ 0.69
MRE11P49959 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC19.35■□□□□ 0.69
MRE11P49959 TMED1-207ENST00000591695 809 ntTSL 5 BASIC19.35■□□□□ 0.69
MRE11P49959 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC19.35■□□□□ 0.69
MRE11P49959 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC19.35■□□□□ 0.69
MRE11P49959 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
MRE11P49959 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
MRE11P49959 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
MRE11P49959 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
MRE11P49959 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
MRE11P49959 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
MRE11P49959 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
MRE11P49959 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
MRE11P49959 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
MRE11P49959 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
MRE11P49959 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
MRE11P49959 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
MRE11P49959 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC19.35■□□□□ 0.69
MRE11P49959 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
MRE11P49959 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
MRE11P49959 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
MRE11P49959 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC19.35■□□□□ 0.69
MRE11P49959 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
MRE11P49959 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms