Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 PCDHB17P-201ENST00000539533 2393 ntBASIC15.19■□□□□ 0.02
RFC3P40938 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC15.19■□□□□ 0.02
RFC3P40938 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
RFC3P40938 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
RFC3P40938 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC15.19■□□□□ 0.02
RFC3P40938 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
RFC3P40938 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
RFC3P40938 NKILA-202ENST00000614771 2598 ntBASIC15.19■□□□□ 0.02
RFC3P40938 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC15.19■□□□□ 0.02
RFC3P40938 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
RFC3P40938 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC15.19■□□□□ 0.02
RFC3P40938 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
RFC3P40938 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC15.19■□□□□ 0.02
RFC3P40938 CD99-202ENST00000381180 530 ntTSL 2 BASIC15.19■□□□□ 0.02
RFC3P40938 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC15.19■□□□□ 0.02
RFC3P40938 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC15.19■□□□□ 0.02
RFC3P40938 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
RFC3P40938 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
RFC3P40938 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC15.19■□□□□ 0.02
RFC3P40938 INO80E-210ENST00000567705 880 ntTSL 3 BASIC15.19■□□□□ 0.02
RFC3P40938 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC15.19■□□□□ 0.02
RFC3P40938 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
RFC3P40938 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC15.19■□□□□ 0.02
RFC3P40938 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
RFC3P40938 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
RFC3P40938 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
RFC3P40938 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC15.19■□□□□ 0.02
RFC3P40938 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
RFC3P40938 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
RFC3P40938 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC15.19■□□□□ 0.02
RFC3P40938 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC15.19■□□□□ 0.02
RFC3P40938 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
RFC3P40938 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
RFC3P40938 NARF-206ENST00000457415 1668 ntTSL 5 BASIC15.19■□□□□ 0.02
RFC3P40938 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
RFC3P40938 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
RFC3P40938 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
RFC3P40938 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
RFC3P40938 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC15.18■□□□□ 0.02
RFC3P40938 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
RFC3P40938 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
RFC3P40938 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
RFC3P40938 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
RFC3P40938 AC060834.1-201ENST00000443027 2032 ntBASIC15.18■□□□□ 0.02
RFC3P40938 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
RFC3P40938 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
RFC3P40938 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC15.18■□□□□ 0.02
RFC3P40938 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
RFC3P40938 STARD13-205ENST00000439831 945 ntTSL 2 BASIC15.18■□□□□ 0.02
RFC3P40938 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
RFC3P40938 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC15.18■□□□□ 0.02
RFC3P40938 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
RFC3P40938 SLC25A39P2-201ENST00000537614 270 ntBASIC15.18■□□□□ 0.02
RFC3P40938 DUX4L27-201ENST00000554796 1261 ntBASIC15.18■□□□□ 0.02
RFC3P40938 AL138918.1-201ENST00000568306 659 ntBASIC15.18■□□□□ 0.02
RFC3P40938 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC15.18■□□□□ 0.02
RFC3P40938 MIR4492-201ENST00000581627 80 ntBASIC15.18■□□□□ 0.02
RFC3P40938 LINC02084-201ENST00000606069 1096 ntBASIC15.18■□□□□ 0.02
RFC3P40938 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC15.18■□□□□ 0.02
RFC3P40938 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
RFC3P40938 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
RFC3P40938 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
RFC3P40938 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
RFC3P40938 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
RFC3P40938 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
RFC3P40938 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
RFC3P40938 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC15.18■□□□□ 0.02
RFC3P40938 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
RFC3P40938 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
RFC3P40938 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
RFC3P40938 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
RFC3P40938 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
RFC3P40938 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
RFC3P40938 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
RFC3P40938 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
RFC3P40938 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC15.17■□□□□ 0.02
RFC3P40938 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
RFC3P40938 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
RFC3P40938 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
RFC3P40938 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
RFC3P40938 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
RFC3P40938 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
RFC3P40938 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
RFC3P40938 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
RFC3P40938 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
RFC3P40938 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
RFC3P40938 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC15.17■□□□□ 0.02
RFC3P40938 AC011676.5-201ENST00000624864 2660 ntBASIC15.17■□□□□ 0.02
RFC3P40938 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC15.17■□□□□ 0.02
RFC3P40938 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
RFC3P40938 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
RFC3P40938 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
RFC3P40938 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
RFC3P40938 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
RFC3P40938 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
RFC3P40938 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC15.17■□□□□ 0.02
RFC3P40938 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
RFC3P40938 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
RFC3P40938 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
RFC3P40938 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 52 ms