Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
HOXD3P31249 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC12.83□□□□□ -0.36
HOXD3P31249 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC12.83□□□□□ -0.36
HOXD3P31249 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC12.83□□□□□ -0.36
HOXD3P31249 PC-204ENST00000524491 1714 ntTSL 2 BASIC12.82□□□□□ -0.36
HOXD3P31249 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
HOXD3P31249 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC12.82□□□□□ -0.36
HOXD3P31249 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC12.82□□□□□ -0.36
HOXD3P31249 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
HOXD3P31249 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC12.82□□□□□ -0.36
HOXD3P31249 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC12.82□□□□□ -0.36
HOXD3P31249 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
HOXD3P31249 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
HOXD3P31249 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
HOXD3P31249 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
HOXD3P31249 SPN-201ENST00000360121 6894 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
HOXD3P31249 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
HOXD3P31249 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
HOXD3P31249 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
HOXD3P31249 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
HOXD3P31249 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
HOXD3P31249 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
HOXD3P31249 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
HOXD3P31249 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
HOXD3P31249 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC12.82□□□□□ -0.36
HOXD3P31249 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC12.82□□□□□ -0.36
HOXD3P31249 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC12.82□□□□□ -0.36
HOXD3P31249 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
HOXD3P31249 AC079140.1-201ENST00000508039 487 ntBASIC12.82□□□□□ -0.36
HOXD3P31249 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC12.82□□□□□ -0.36
HOXD3P31249 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC12.82□□□□□ -0.36
HOXD3P31249 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC12.82□□□□□ -0.36
HOXD3P31249 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC12.82□□□□□ -0.36
HOXD3P31249 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC12.82□□□□□ -0.36
HOXD3P31249 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC12.82□□□□□ -0.36
HOXD3P31249 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC12.82□□□□□ -0.36
HOXD3P31249 AC021097.1-201ENST00000607902 574 ntBASIC12.82□□□□□ -0.36
HOXD3P31249 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
HOXD3P31249 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC12.82□□□□□ -0.36
HOXD3P31249 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
HOXD3P31249 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC12.82□□□□□ -0.36
HOXD3P31249 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
HOXD3P31249 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC12.82□□□□□ -0.36
HOXD3P31249 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC12.82□□□□□ -0.36
HOXD3P31249 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC12.82□□□□□ -0.36
HOXD3P31249 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
HOXD3P31249 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC12.82□□□□□ -0.36
HOXD3P31249 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
HOXD3P31249 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC12.82□□□□□ -0.36
HOXD3P31249 SLC43A2-201ENST00000301335 8136 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
HOXD3P31249 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC12.82□□□□□ -0.36
HOXD3P31249 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC12.82□□□□□ -0.36
HOXD3P31249 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
HOXD3P31249 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC12.82□□□□□ -0.36
HOXD3P31249 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC12.82□□□□□ -0.36
HOXD3P31249 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC12.82□□□□□ -0.36
HOXD3P31249 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
HOXD3P31249 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
HOXD3P31249 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
HOXD3P31249 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
HOXD3P31249 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
HOXD3P31249 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
HOXD3P31249 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
HOXD3P31249 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
HOXD3P31249 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
HOXD3P31249 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC12.81□□□□□ -0.36
HOXD3P31249 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
HOXD3P31249 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
HOXD3P31249 AC080080.1-201ENST00000625121 2420 ntBASIC12.81□□□□□ -0.36
HOXD3P31249 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC12.81□□□□□ -0.36
HOXD3P31249 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
HOXD3P31249 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
HOXD3P31249 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC12.81□□□□□ -0.36
HOXD3P31249 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC12.81□□□□□ -0.36
HOXD3P31249 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
HOXD3P31249 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
HOXD3P31249 TFAMP1-201ENST00000412727 736 ntBASIC12.81□□□□□ -0.36
HOXD3P31249 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC12.81□□□□□ -0.36
HOXD3P31249 CNN2P2-201ENST00000443536 909 ntBASIC12.81□□□□□ -0.36
HOXD3P31249 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
HOXD3P31249 CNN2P3-201ENST00000450201 906 ntBASIC12.81□□□□□ -0.36
HOXD3P31249 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
HOXD3P31249 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
HOXD3P31249 AC067863.1-201ENST00000494933 530 ntBASIC12.81□□□□□ -0.36
HOXD3P31249 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
HOXD3P31249 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC12.81□□□□□ -0.36
HOXD3P31249 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC12.81□□□□□ -0.36
HOXD3P31249 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC12.81□□□□□ -0.36
HOXD3P31249 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC12.81□□□□□ -0.36
HOXD3P31249 AL135744.1-201ENST00000565098 629 ntBASIC12.81□□□□□ -0.36
HOXD3P31249 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
HOXD3P31249 AL390955.2-201ENST00000603032 514 ntBASIC12.81□□□□□ -0.36
HOXD3P31249 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC12.81□□□□□ -0.36
HOXD3P31249 AL136317.3-201ENST00000618497 906 ntBASIC12.81□□□□□ -0.36
HOXD3P31249 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
HOXD3P31249 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
HOXD3P31249 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC12.81□□□□□ -0.36
HOXD3P31249 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
HOXD3P31249 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC12.81□□□□□ -0.36
HOXD3P31249 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms