Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC12.68□□□□□ -0.38
HLA-DMBP28068 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
HLA-DMBP28068 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
HLA-DMBP28068 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC12.68□□□□□ -0.38
HLA-DMBP28068 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC12.68□□□□□ -0.38
HLA-DMBP28068 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC12.68□□□□□ -0.38
HLA-DMBP28068 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC12.68□□□□□ -0.38
HLA-DMBP28068 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC12.68□□□□□ -0.38
HLA-DMBP28068 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC12.68□□□□□ -0.38
HLA-DMBP28068 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC12.68□□□□□ -0.38
HLA-DMBP28068 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC12.68□□□□□ -0.38
HLA-DMBP28068 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
HLA-DMBP28068 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
HLA-DMBP28068 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
HLA-DMBP28068 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC12.68□□□□□ -0.38
HLA-DMBP28068 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC12.68□□□□□ -0.38
HLA-DMBP28068 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
HLA-DMBP28068 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
HLA-DMBP28068 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC12.68□□□□□ -0.38
HLA-DMBP28068 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC12.68□□□□□ -0.38
HLA-DMBP28068 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
HLA-DMBP28068 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
HLA-DMBP28068 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC12.68□□□□□ -0.38
HLA-DMBP28068 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
HLA-DMBP28068 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
HLA-DMBP28068 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC12.68□□□□□ -0.38
HLA-DMBP28068 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC12.68□□□□□ -0.38
HLA-DMBP28068 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC12.68□□□□□ -0.38
HLA-DMBP28068 FAM197Y8-203ENST00000450145 560 ntBASIC12.68□□□□□ -0.38
HLA-DMBP28068 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC12.68□□□□□ -0.38
HLA-DMBP28068 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC12.68□□□□□ -0.38
HLA-DMBP28068 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC12.68□□□□□ -0.38
HLA-DMBP28068 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC12.68□□□□□ -0.38
HLA-DMBP28068 RNF151-202ENST00000569210 853 ntTSL 2 BASIC12.68□□□□□ -0.38
HLA-DMBP28068 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
HLA-DMBP28068 MTDHP4-201ENST00000600287 670 ntBASIC12.68□□□□□ -0.38
HLA-DMBP28068 VPS51-217ENST00000639871 243 ntTSL 5 BASIC12.68□□□□□ -0.38
HLA-DMBP28068 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC12.68□□□□□ -0.38
HLA-DMBP28068 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
HLA-DMBP28068 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC12.68□□□□□ -0.38
HLA-DMBP28068 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC12.68□□□□□ -0.38
HLA-DMBP28068 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
HLA-DMBP28068 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC12.68□□□□□ -0.38
HLA-DMBP28068 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC12.68□□□□□ -0.38
HLA-DMBP28068 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
HLA-DMBP28068 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC12.68□□□□□ -0.38
HLA-DMBP28068 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC12.68□□□□□ -0.38
HLA-DMBP28068 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC12.68□□□□□ -0.38
HLA-DMBP28068 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
HLA-DMBP28068 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
HLA-DMBP28068 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
HLA-DMBP28068 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC12.68□□□□□ -0.38
HLA-DMBP28068 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC12.68□□□□□ -0.38
HLA-DMBP28068 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC12.68□□□□□ -0.38
HLA-DMBP28068 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
HLA-DMBP28068 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
HLA-DMBP28068 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC12.68□□□□□ -0.38
HLA-DMBP28068 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
HLA-DMBP28068 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
HLA-DMBP28068 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
HLA-DMBP28068 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
HLA-DMBP28068 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC12.68□□□□□ -0.38
HLA-DMBP28068 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
HLA-DMBP28068 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
HLA-DMBP28068 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC12.67□□□□□ -0.38
HLA-DMBP28068 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
HLA-DMBP28068 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC12.67□□□□□ -0.38
HLA-DMBP28068 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
HLA-DMBP28068 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
HLA-DMBP28068 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC12.67□□□□□ -0.38
HLA-DMBP28068 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
HLA-DMBP28068 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
HLA-DMBP28068 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
HLA-DMBP28068 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC12.67□□□□□ -0.38
HLA-DMBP28068 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC12.67□□□□□ -0.38
HLA-DMBP28068 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
HLA-DMBP28068 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC12.67□□□□□ -0.38
HLA-DMBP28068 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
HLA-DMBP28068 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
HLA-DMBP28068 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
HLA-DMBP28068 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC12.67□□□□□ -0.38
HLA-DMBP28068 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
HLA-DMBP28068 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
HLA-DMBP28068 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
HLA-DMBP28068 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
HLA-DMBP28068 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
HLA-DMBP28068 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC12.67□□□□□ -0.38
HLA-DMBP28068 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
HLA-DMBP28068 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC12.67□□□□□ -0.38
HLA-DMBP28068 MRPL3P1-201ENST00000400109 1033 ntBASIC12.67□□□□□ -0.38
HLA-DMBP28068 PTCHD3P3-201ENST00000403073 906 ntBASIC12.67□□□□□ -0.38
HLA-DMBP28068 RBM17P3-201ENST00000417687 1192 ntBASIC12.67□□□□□ -0.38
HLA-DMBP28068 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
HLA-DMBP28068 PAWRP1-201ENST00000451083 565 ntBASIC12.67□□□□□ -0.38
HLA-DMBP28068 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC12.67□□□□□ -0.38
HLA-DMBP28068 FGFR3P6-201ENST00000457012 610 ntBASIC12.67□□□□□ -0.38
HLA-DMBP28068 AC087163.2-201ENST00000457299 853 ntBASIC12.67□□□□□ -0.38
HLA-DMBP28068 AF186996.4-201ENST00000467186 377 ntBASIC12.67□□□□□ -0.38
HLA-DMBP28068 MOK-208ENST00000519058 917 ntTSL 2 BASIC12.67□□□□□ -0.38
HLA-DMBP28068 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms