Protein–RNA interactions for Protein: P06400

RB1, Retinoblastoma-associated protein, humanhuman

Predictions only

Length 928 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RB1P06400 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
RB1P06400 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
RB1P06400 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC17.38■□□□□ 0.37
RB1P06400 AC119751.2-201ENST00000504529 210 ntBASIC17.38■□□□□ 0.37
RB1P06400 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
RB1P06400 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC17.38■□□□□ 0.37
RB1P06400 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC17.38■□□□□ 0.37
RB1P06400 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC17.38■□□□□ 0.37
RB1P06400 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC17.38■□□□□ 0.37
RB1P06400 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC17.38■□□□□ 0.37
RB1P06400 WFDC1-204ENST00000613603 549 ntBASIC17.38■□□□□ 0.37
RB1P06400 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
RB1P06400 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC17.38■□□□□ 0.37
RB1P06400 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
RB1P06400 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
RB1P06400 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
RB1P06400 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC17.38■□□□□ 0.37
RB1P06400 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
RB1P06400 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC17.38■□□□□ 0.37
RB1P06400 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
RB1P06400 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
RB1P06400 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
RB1P06400 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC17.38■□□□□ 0.37
RB1P06400 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
RB1P06400 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
RB1P06400 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
RB1P06400 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
RB1P06400 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
RB1P06400 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC17.37■□□□□ 0.37
RB1P06400 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
RB1P06400 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC17.37■□□□□ 0.37
RB1P06400 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
RB1P06400 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC17.37■□□□□ 0.37
RB1P06400 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
RB1P06400 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC17.37■□□□□ 0.37
RB1P06400 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
RB1P06400 AC008764.6-201ENST00000595909 2069 ntBASIC17.37■□□□□ 0.37
RB1P06400 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
RB1P06400 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
RB1P06400 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
RB1P06400 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC17.37■□□□□ 0.37
RB1P06400 RPF1-202ENST00000370656 724 ntTSL 2 BASIC17.37■□□□□ 0.37
RB1P06400 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
RB1P06400 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
RB1P06400 AC098850.1-201ENST00000419919 790 ntBASIC17.37■□□□□ 0.37
RB1P06400 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC17.37■□□□□ 0.37
RB1P06400 AL356489.1-201ENST00000449144 1144 ntTSL 3 BASIC17.37■□□□□ 0.37
RB1P06400 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC17.37■□□□□ 0.37
RB1P06400 AL589987.1-201ENST00000453380 819 ntBASIC17.37■□□□□ 0.37
RB1P06400 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC17.37■□□□□ 0.37
RB1P06400 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
RB1P06400 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
RB1P06400 TIMM17BP1-201ENST00000545713 516 ntBASIC17.37■□□□□ 0.37
RB1P06400 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC17.37■□□□□ 0.37
RB1P06400 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
RB1P06400 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC17.37■□□□□ 0.37
RB1P06400 AL033527.5-201ENST00000641382 801 ntBASIC17.37■□□□□ 0.37
RB1P06400 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
RB1P06400 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
RB1P06400 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
RB1P06400 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
RB1P06400 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC17.37■□□□□ 0.37
RB1P06400 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
RB1P06400 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
RB1P06400 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
RB1P06400 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
RB1P06400 DEK-201ENST00000244776 1441 ntTSL 2 BASIC17.37■□□□□ 0.37
RB1P06400 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
RB1P06400 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
RB1P06400 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
RB1P06400 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC17.37■□□□□ 0.37
RB1P06400 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
RB1P06400 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC17.37■□□□□ 0.37
RB1P06400 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
RB1P06400 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
RB1P06400 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
RB1P06400 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
RB1P06400 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
RB1P06400 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
RB1P06400 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
RB1P06400 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
RB1P06400 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC17.36■□□□□ 0.37
RB1P06400 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
RB1P06400 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
RB1P06400 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
RB1P06400 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
RB1P06400 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
RB1P06400 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
RB1P06400 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
RB1P06400 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
RB1P06400 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC17.36■□□□□ 0.37
RB1P06400 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC17.36■□□□□ 0.37
RB1P06400 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC17.36■□□□□ 0.37
RB1P06400 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC17.36■□□□□ 0.37
RB1P06400 AC074044.1-201ENST00000609673 707 ntBASIC17.36■□□□□ 0.37
RB1P06400 MIR6775-201ENST00000617557 69 ntBASIC17.36■□□□□ 0.37
RB1P06400 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC17.36■□□□□ 0.37
RB1P06400 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
RB1P06400 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC17.36■□□□□ 0.37
RB1P06400 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC17.36■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms