Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
TNFP01375 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
TNFP01375 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC16.12■□□□□ 0.17
TNFP01375 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
TNFP01375 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
TNFP01375 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
TNFP01375 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
TNFP01375 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
TNFP01375 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
TNFP01375 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TNFP01375 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC16.11■□□□□ 0.17
TNFP01375 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TNFP01375 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC16.11■□□□□ 0.17
TNFP01375 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TNFP01375 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC16.11■□□□□ 0.17
TNFP01375 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
TNFP01375 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
TNFP01375 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC16.11■□□□□ 0.17
TNFP01375 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC16.11■□□□□ 0.17
TNFP01375 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC16.11■□□□□ 0.17
TNFP01375 TSPY16P-201ENST00000449843 468 ntBASIC16.11■□□□□ 0.17
TNFP01375 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC16.11■□□□□ 0.17
TNFP01375 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC16.11■□□□□ 0.17
TNFP01375 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC16.11■□□□□ 0.17
TNFP01375 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC16.11■□□□□ 0.17
TNFP01375 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC16.11■□□□□ 0.17
TNFP01375 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC16.11■□□□□ 0.17
TNFP01375 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC16.11■□□□□ 0.17
TNFP01375 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC16.11■□□□□ 0.17
TNFP01375 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TNFP01375 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TNFP01375 AC005915.1-201ENST00000624912 2018 ntBASIC16.11■□□□□ 0.17
TNFP01375 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
TNFP01375 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TNFP01375 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TNFP01375 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
TNFP01375 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
TNFP01375 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
TNFP01375 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC16.1■□□□□ 0.17
TNFP01375 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TNFP01375 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TNFP01375 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
TNFP01375 AMT-206ENST00000458307 1860 ntTSL 2 BASIC16.1■□□□□ 0.17
TNFP01375 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC16.1■□□□□ 0.17
TNFP01375 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TNFP01375 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TNFP01375 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TNFP01375 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TNFP01375 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
TNFP01375 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TNFP01375 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
TNFP01375 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TNFP01375 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TNFP01375 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
TNFP01375 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TNFP01375 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TNFP01375 MTND6P24-201ENST00000440466 518 ntBASIC16.1■□□□□ 0.17
TNFP01375 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
TNFP01375 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC16.1■□□□□ 0.17
TNFP01375 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC16.1■□□□□ 0.17
TNFP01375 LITAF-210ENST00000571976 548 ntTSL 2 BASIC16.1■□□□□ 0.17
TNFP01375 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
TNFP01375 LITAF-214ENST00000574703 486 ntTSL 2 BASIC16.1■□□□□ 0.17
TNFP01375 AC138761.1-201ENST00000584393 385 ntBASIC16.1■□□□□ 0.17
TNFP01375 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TNFP01375 GPER1-207ENST00000619052 571 ntTSL 2 BASIC16.1■□□□□ 0.17
TNFP01375 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC16.1■□□□□ 0.17
TNFP01375 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC16.1■□□□□ 0.17
TNFP01375 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
TNFP01375 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC16.1■□□□□ 0.17
TNFP01375 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC16.1■□□□□ 0.17
TNFP01375 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TNFP01375 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
TNFP01375 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC16.1■□□□□ 0.17
TNFP01375 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TNFP01375 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
TNFP01375 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
TNFP01375 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
TNFP01375 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
TNFP01375 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC16.09■□□□□ 0.17
TNFP01375 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC16.09■□□□□ 0.17
TNFP01375 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC16.09■□□□□ 0.17
TNFP01375 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
TNFP01375 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
TNFP01375 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
TNFP01375 AC105020.1-201ENST00000435356 2205 ntBASIC16.09■□□□□ 0.17
TNFP01375 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC16.09■□□□□ 0.17
TNFP01375 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
TNFP01375 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
TNFP01375 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
TNFP01375 LHX6-205ENST00000464484 666 ntTSL 2 BASIC16.09■□□□□ 0.17
TNFP01375 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
TNFP01375 SATB1-217ENST00000493952 626 ntTSL 3 BASIC16.09■□□□□ 0.17
TNFP01375 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
TNFP01375 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC16.09■□□□□ 0.17
TNFP01375 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC16.09■□□□□ 0.17
TNFP01375 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
TNFP01375 RN7SL828P-201ENST00000607615 303 ntBASIC16.09■□□□□ 0.17
TNFP01375 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
TNFP01375 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 43.5 ms