Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
LDLRP01130 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
LDLRP01130 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
LDLRP01130 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
LDLRP01130 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
LDLRP01130 KRT18P28-201ENST00000453838 1332 ntBASIC16.09■□□□□ 0.17
LDLRP01130 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC16.09■□□□□ 0.17
LDLRP01130 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
LDLRP01130 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
LDLRP01130 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
LDLRP01130 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
LDLRP01130 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
LDLRP01130 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
LDLRP01130 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
LDLRP01130 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
LDLRP01130 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
LDLRP01130 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
LDLRP01130 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
LDLRP01130 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
LDLRP01130 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC16.09■□□□□ 0.17
LDLRP01130 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
LDLRP01130 AC024909.3-201ENST00000611513 2257 ntBASIC16.08■□□□□ 0.17
LDLRP01130 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.17
LDLRP01130 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC16.08■□□□□ 0.17
LDLRP01130 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
LDLRP01130 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
LDLRP01130 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
LDLRP01130 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
LDLRP01130 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC16.08■□□□□ 0.16
LDLRP01130 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC16.08■□□□□ 0.16
LDLRP01130 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
LDLRP01130 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
LDLRP01130 AP006288.1-201ENST00000446065 395 ntBASIC16.08■□□□□ 0.16
LDLRP01130 RBSN-204ENST00000449050 903 ntTSL 2 BASIC16.08■□□□□ 0.16
LDLRP01130 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC16.08■□□□□ 0.16
LDLRP01130 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC16.08■□□□□ 0.16
LDLRP01130 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC16.08■□□□□ 0.16
LDLRP01130 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC16.08■□□□□ 0.16
LDLRP01130 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC16.08■□□□□ 0.16
LDLRP01130 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC16.08■□□□□ 0.16
LDLRP01130 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
LDLRP01130 AC008735.5-201ENST00000623544 497 ntBASIC16.08■□□□□ 0.16
LDLRP01130 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
LDLRP01130 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC16.08■□□□□ 0.16
LDLRP01130 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
LDLRP01130 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
LDLRP01130 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC16.08■□□□□ 0.16
LDLRP01130 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
LDLRP01130 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC16.08■□□□□ 0.16
LDLRP01130 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
LDLRP01130 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC16.08■□□□□ 0.16
LDLRP01130 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
LDLRP01130 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
LDLRP01130 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC16.08■□□□□ 0.16
LDLRP01130 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
LDLRP01130 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
LDLRP01130 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
LDLRP01130 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
LDLRP01130 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
LDLRP01130 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
LDLRP01130 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC16.07■□□□□ 0.16
LDLRP01130 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
LDLRP01130 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC16.07■□□□□ 0.16
LDLRP01130 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC16.07■□□□□ 0.16
LDLRP01130 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
LDLRP01130 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC16.07■□□□□ 0.16
LDLRP01130 AC068418.2-201ENST00000577309 3703 ntBASIC16.07■□□□□ 0.16
LDLRP01130 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC16.07■□□□□ 0.16
LDLRP01130 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
LDLRP01130 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC16.07■□□□□ 0.16
LDLRP01130 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
LDLRP01130 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
LDLRP01130 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC16.07■□□□□ 0.16
LDLRP01130 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
LDLRP01130 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
LDLRP01130 INIP-202ENST00000374236 874 ntTSL 2 BASIC16.07■□□□□ 0.16
LDLRP01130 COX5BP2-201ENST00000392354 334 ntBASIC16.07■□□□□ 0.16
LDLRP01130 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
LDLRP01130 AC211486.1-202ENST00000416371 468 ntBASIC16.07■□□□□ 0.16
LDLRP01130 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC16.07■□□□□ 0.16
LDLRP01130 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC16.07■□□□□ 0.16
LDLRP01130 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC16.07■□□□□ 0.16
LDLRP01130 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC16.07■□□□□ 0.16
LDLRP01130 AC211476.1-201ENST00000503899 468 ntBASIC16.07■□□□□ 0.16
LDLRP01130 IGHV3-52-201ENST00000519770 353 ntBASIC16.07■□□□□ 0.16
LDLRP01130 AP002490.2-201ENST00000524791 560 ntBASIC16.07■□□□□ 0.16
LDLRP01130 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC16.07■□□□□ 0.16
LDLRP01130 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC16.07■□□□□ 0.16
LDLRP01130 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
LDLRP01130 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC16.07■□□□□ 0.16
LDLRP01130 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC16.07■□□□□ 0.16
LDLRP01130 MTDHP5-201ENST00000598980 586 ntBASIC16.07■□□□□ 0.16
LDLRP01130 AC025062.2-201ENST00000605477 670 ntBASIC16.07■□□□□ 0.16
LDLRP01130 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC16.07■□□□□ 0.16
LDLRP01130 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC16.07■□□□□ 0.16
LDLRP01130 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC16.07■□□□□ 0.16
LDLRP01130 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
LDLRP01130 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
LDLRP01130 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
LDLRP01130 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC16.07■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms