Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 AC008735.5-201ENST00000623544 497 ntBASIC16.3■□□□□ 0.2
VPS4BO75351 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
VPS4BO75351 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VPS4BO75351 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC16.3■□□□□ 0.2
VPS4BO75351 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
VPS4BO75351 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VPS4BO75351 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
VPS4BO75351 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VPS4BO75351 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC16.3■□□□□ 0.2
VPS4BO75351 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VPS4BO75351 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC16.3■□□□□ 0.2
VPS4BO75351 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VPS4BO75351 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
VPS4BO75351 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC16.3■□□□□ 0.2
VPS4BO75351 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
VPS4BO75351 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC16.3■□□□□ 0.2
VPS4BO75351 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
VPS4BO75351 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
VPS4BO75351 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
VPS4BO75351 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VPS4BO75351 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
VPS4BO75351 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
VPS4BO75351 AC079328.2-201ENST00000561241 3354 ntBASIC16.29■□□□□ 0.2
VPS4BO75351 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
VPS4BO75351 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC16.29■□□□□ 0.2
VPS4BO75351 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
VPS4BO75351 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VPS4BO75351 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
VPS4BO75351 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VPS4BO75351 AC002310.6-201ENST00000624451 1377 ntBASIC16.29■□□□□ 0.2
VPS4BO75351 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC16.29■□□□□ 0.2
VPS4BO75351 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
VPS4BO75351 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
VPS4BO75351 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC16.29■□□□□ 0.2
VPS4BO75351 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
VPS4BO75351 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
VPS4BO75351 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VPS4BO75351 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
VPS4BO75351 ABCD1P5-201ENST00000445663 754 ntBASIC16.29■□□□□ 0.2
VPS4BO75351 RBSN-204ENST00000449050 903 ntTSL 2 BASIC16.29■□□□□ 0.2
VPS4BO75351 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC16.29■□□□□ 0.2
VPS4BO75351 AC105339.3-201ENST00000560043 636 ntBASIC16.29■□□□□ 0.2
VPS4BO75351 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC16.29■□□□□ 0.2
VPS4BO75351 SNHG9-202ENST00000564014 471 ntBASIC16.29■□□□□ 0.2
VPS4BO75351 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC16.29■□□□□ 0.2
VPS4BO75351 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC16.29■□□□□ 0.2
VPS4BO75351 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
VPS4BO75351 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
VPS4BO75351 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC16.29■□□□□ 0.2
VPS4BO75351 PKD1P5-201ENST00000532415 10291 ntBASIC16.29■□□□□ 0.2
VPS4BO75351 AC079776.2-201ENST00000641154 1609 ntBASIC16.29■□□□□ 0.2
VPS4BO75351 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
VPS4BO75351 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
VPS4BO75351 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC16.29■□□□□ 0.2
VPS4BO75351 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VPS4BO75351 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
VPS4BO75351 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC16.29■□□□□ 0.2
VPS4BO75351 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VPS4BO75351 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VPS4BO75351 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC16.29■□□□□ 0.2
VPS4BO75351 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
VPS4BO75351 AC007950.2-201ENST00000615045 2347 ntBASIC16.29■□□□□ 0.2
VPS4BO75351 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC16.29■□□□□ 0.2
VPS4BO75351 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
VPS4BO75351 AL139384.1-201ENST00000612143 3047 ntBASIC16.29■□□□□ 0.2
VPS4BO75351 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VPS4BO75351 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VPS4BO75351 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
VPS4BO75351 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC16.29■□□□□ 0.2
VPS4BO75351 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
VPS4BO75351 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
VPS4BO75351 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VPS4BO75351 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
VPS4BO75351 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
VPS4BO75351 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
VPS4BO75351 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VPS4BO75351 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
VPS4BO75351 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VPS4BO75351 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
VPS4BO75351 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
VPS4BO75351 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
VPS4BO75351 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
VPS4BO75351 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
VPS4BO75351 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
VPS4BO75351 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC16.28■□□□□ 0.2
VPS4BO75351 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC16.28■□□□□ 0.2
VPS4BO75351 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
VPS4BO75351 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
VPS4BO75351 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC16.28■□□□□ 0.2
VPS4BO75351 AC007967.2-201ENST00000432613 625 ntBASIC16.28■□□□□ 0.2
VPS4BO75351 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC16.28■□□□□ 0.2
VPS4BO75351 MSRA-206ENST00000521209 814 ntTSL 3 BASIC16.28■□□□□ 0.2
VPS4BO75351 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC16.28■□□□□ 0.2
VPS4BO75351 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC16.28■□□□□ 0.2
VPS4BO75351 AL596442.2-201ENST00000610240 980 ntBASIC16.28■□□□□ 0.2
VPS4BO75351 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VPS4BO75351 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC16.28■□□□□ 0.2
VPS4BO75351 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC16.28■□□□□ 0.2
VPS4BO75351 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC16.28■□□□□ 0.2
VPS4BO75351 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC16.28■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 56.1 ms