Protein–RNA interactions for Protein: O00570

SOX1, Transcription factor SOX-1, humanhuman

Predicted RBP Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX1O00570 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC17.4■□□□□ 0.38
SOX1O00570 PODN-203ENST00000395871 2744 ntTSL 5 BASIC17.4■□□□□ 0.38
SOX1O00570 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC17.4■□□□□ 0.38
SOX1O00570 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SOX1O00570 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC17.4■□□□□ 0.38
SOX1O00570 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
SOX1O00570 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SOX1O00570 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SOX1O00570 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
SOX1O00570 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SOX1O00570 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SOX1O00570 TSPO-201ENST00000329563 955 ntAPPRIS P1 TSL 3 BASIC17.39■□□□□ 0.37
SOX1O00570 NUDT1-203ENST00000356714 662 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SOX1O00570 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC17.39■□□□□ 0.37
SOX1O00570 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
SOX1O00570 HNRNPA1P32-201ENST00000396326 963 ntBASIC17.39■□□□□ 0.37
SOX1O00570 NUDT1-204ENST00000397046 712 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SOX1O00570 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SOX1O00570 AC069218.1-201ENST00000435269 762 ntBASIC17.39■□□□□ 0.37
SOX1O00570 AP000356.1-201ENST00000438893 364 ntTSL 3 BASIC17.39■□□□□ 0.37
SOX1O00570 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC17.39■□□□□ 0.37
SOX1O00570 AC104784.1-201ENST00000473096 294 ntBASIC17.39■□□□□ 0.37
SOX1O00570 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SOX1O00570 AC245884.6-201ENST00000515672 1067 ntBASIC17.39■□□□□ 0.37
SOX1O00570 FBXL8-208ENST00000521920 574 ntTSL 4 BASIC17.39■□□□□ 0.37
SOX1O00570 IQSEC3P1-201ENST00000538799 536 ntBASIC17.39■□□□□ 0.37
SOX1O00570 CYB561A3-219ENST00000544118 1136 ntTSL 5 BASIC17.39■□□□□ 0.37
SOX1O00570 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SOX1O00570 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC17.39■□□□□ 0.37
SOX1O00570 CCDC144NL-AS1-209ENST00000577860 884 ntTSL 5 BASIC17.39■□□□□ 0.37
SOX1O00570 MIR4741-201ENST00000579822 90 ntBASIC17.39■□□□□ 0.37
SOX1O00570 BRI3BPP1-201ENST00000594224 787 ntBASIC17.39■□□□□ 0.37
SOX1O00570 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC17.39■□□□□ 0.37
SOX1O00570 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SOX1O00570 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
SOX1O00570 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
SOX1O00570 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SOX1O00570 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
SOX1O00570 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SOX1O00570 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC17.39■□□□□ 0.37
SOX1O00570 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC17.39■□□□□ 0.37
SOX1O00570 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC17.39■□□□□ 0.37
SOX1O00570 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SOX1O00570 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
SOX1O00570 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SOX1O00570 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC17.38■□□□□ 0.37
SOX1O00570 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC17.38■□□□□ 0.37
SOX1O00570 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SOX1O00570 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SOX1O00570 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
SOX1O00570 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SOX1O00570 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
SOX1O00570 REXO1L9P-201ENST00000604264 2108 ntBASIC17.38■□□□□ 0.37
SOX1O00570 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC17.38■□□□□ 0.37
SOX1O00570 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC17.38■□□□□ 0.37
SOX1O00570 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
SOX1O00570 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SOX1O00570 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC17.38■□□□□ 0.37
SOX1O00570 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
SOX1O00570 KAZN-204ENST00000400797 1295 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SOX1O00570 AC244250.1-201ENST00000438185 451 ntTSL 2 BASIC17.38■□□□□ 0.37
SOX1O00570 ATP6V0CP2-201ENST00000469409 207 ntBASIC17.38■□□□□ 0.37
SOX1O00570 RN7SL818P-201ENST00000485099 259 ntBASIC17.38■□□□□ 0.37
SOX1O00570 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC17.38■□□□□ 0.37
SOX1O00570 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC17.38■□□□□ 0.37
SOX1O00570 ENPP7P5-201ENST00000541031 1031 ntBASIC17.38■□□□□ 0.37
SOX1O00570 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC17.38■□□□□ 0.37
SOX1O00570 CLUHP6-201ENST00000580789 941 ntBASIC17.38■□□□□ 0.37
SOX1O00570 AC061975.2-201ENST00000581722 295 ntBASIC17.38■□□□□ 0.37
SOX1O00570 AC104982.3-201ENST00000581995 514 ntBASIC17.38■□□□□ 0.37
SOX1O00570 NEAT1-203ENST00000601801 487 ntTSL 4 BASIC17.38■□□□□ 0.37
SOX1O00570 RN7SL725P-201ENST00000606439 259 ntBASIC17.38■□□□□ 0.37
SOX1O00570 CCDC197-205ENST00000636493 1279 ntAPPRIS P5 TSL 5 BASIC17.38■□□□□ 0.37
SOX1O00570 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SOX1O00570 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
SOX1O00570 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
SOX1O00570 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SOX1O00570 AHCYP2-201ENST00000430630 1300 ntBASIC17.38■□□□□ 0.37
SOX1O00570 DNASE1L2-204ENST00000567494 1301 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SOX1O00570 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC17.38■□□□□ 0.37
SOX1O00570 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SOX1O00570 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC17.38■□□□□ 0.37
SOX1O00570 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SOX1O00570 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC17.38■□□□□ 0.37
SOX1O00570 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SOX1O00570 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SOX1O00570 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC17.37■□□□□ 0.37
SOX1O00570 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC17.37■□□□□ 0.37
SOX1O00570 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SOX1O00570 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC17.37■□□□□ 0.37
SOX1O00570 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SOX1O00570 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC17.37■□□□□ 0.37
SOX1O00570 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC17.37■□□□□ 0.37
SOX1O00570 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
SOX1O00570 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SOX1O00570 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
SOX1O00570 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
SOX1O00570 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
SOX1O00570 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC17.37■□□□□ 0.37
SOX1O00570 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms