Protein–RNA interactions for Protein: Q9Y5F3

PCDHB1, Protocadherin beta-1, humanhuman

Predictions only

Length 818 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB1Q9Y5F3 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.25
PCDHB1Q9Y5F3 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
PCDHB1Q9Y5F3 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
PCDHB1Q9Y5F3 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC16.58■□□□□ 0.24
PCDHB1Q9Y5F3 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC16.58■□□□□ 0.24
PCDHB1Q9Y5F3 CXCL1P1-201ENST00000502804 216 ntBASIC16.58■□□□□ 0.24
PCDHB1Q9Y5F3 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC16.58■□□□□ 0.24
PCDHB1Q9Y5F3 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC16.58■□□□□ 0.24
PCDHB1Q9Y5F3 AC022145.2-201ENST00000598203 171 ntBASIC16.58■□□□□ 0.24
PCDHB1Q9Y5F3 WT1-AS_2.1-201ENST00000613208 137 ntBASIC16.58■□□□□ 0.24
PCDHB1Q9Y5F3 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC16.58■□□□□ 0.24
PCDHB1Q9Y5F3 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
PCDHB1Q9Y5F3 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
PCDHB1Q9Y5F3 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC16.58■□□□□ 0.24
PCDHB1Q9Y5F3 AC092919.2-201ENST00000623631 1645 ntBASIC16.58■□□□□ 0.24
PCDHB1Q9Y5F3 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
PCDHB1Q9Y5F3 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC16.58■□□□□ 0.24
PCDHB1Q9Y5F3 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
PCDHB1Q9Y5F3 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC16.58■□□□□ 0.24
PCDHB1Q9Y5F3 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
PCDHB1Q9Y5F3 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
PCDHB1Q9Y5F3 UBALD1-205ENST00000590891 2641 ntBASIC16.58■□□□□ 0.24
PCDHB1Q9Y5F3 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
PCDHB1Q9Y5F3 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
PCDHB1Q9Y5F3 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
PCDHB1Q9Y5F3 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
PCDHB1Q9Y5F3 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
PCDHB1Q9Y5F3 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC16.57■□□□□ 0.24
PCDHB1Q9Y5F3 AC124067.4-201ENST00000519691 2379 ntBASIC16.57■□□□□ 0.24
PCDHB1Q9Y5F3 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
PCDHB1Q9Y5F3 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC16.57■□□□□ 0.24
PCDHB1Q9Y5F3 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
PCDHB1Q9Y5F3 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
PCDHB1Q9Y5F3 AC012569.1-201ENST00000591191 1524 ntBASIC16.57■□□□□ 0.24
PCDHB1Q9Y5F3 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
PCDHB1Q9Y5F3 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
PCDHB1Q9Y5F3 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
PCDHB1Q9Y5F3 CBR1-202ENST00000399191 838 ntTSL 3 BASIC16.57■□□□□ 0.24
PCDHB1Q9Y5F3 AC092474.2-201ENST00000424288 719 ntBASIC16.57■□□□□ 0.24
PCDHB1Q9Y5F3 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
PCDHB1Q9Y5F3 HLA-J-203ENST00000494367 1087 ntBASIC16.57■□□□□ 0.24
PCDHB1Q9Y5F3 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC16.57■□□□□ 0.24
PCDHB1Q9Y5F3 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC16.57■□□□□ 0.24
PCDHB1Q9Y5F3 AC005498.2-205ENST00000593218 784 ntBASIC16.57■□□□□ 0.24
PCDHB1Q9Y5F3 ACTL9-202ENST00000612068 1252 ntBASIC16.57■□□□□ 0.24
PCDHB1Q9Y5F3 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC16.57■□□□□ 0.24
PCDHB1Q9Y5F3 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
PCDHB1Q9Y5F3 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
PCDHB1Q9Y5F3 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
PCDHB1Q9Y5F3 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
PCDHB1Q9Y5F3 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
PCDHB1Q9Y5F3 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
PCDHB1Q9Y5F3 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
PCDHB1Q9Y5F3 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC16.56■□□□□ 0.24
PCDHB1Q9Y5F3 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
PCDHB1Q9Y5F3 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
PCDHB1Q9Y5F3 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
PCDHB1Q9Y5F3 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC16.56■□□□□ 0.24
PCDHB1Q9Y5F3 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
PCDHB1Q9Y5F3 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
PCDHB1Q9Y5F3 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
PCDHB1Q9Y5F3 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC16.56■□□□□ 0.24
PCDHB1Q9Y5F3 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
PCDHB1Q9Y5F3 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC16.56■□□□□ 0.24
PCDHB1Q9Y5F3 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC16.56■□□□□ 0.24
PCDHB1Q9Y5F3 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
PCDHB1Q9Y5F3 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
PCDHB1Q9Y5F3 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
PCDHB1Q9Y5F3 HLA-DRB6-201ENST00000411500 1235 ntBASIC16.56■□□□□ 0.24
PCDHB1Q9Y5F3 AC023141.5-201ENST00000458585 616 ntBASIC16.56■□□□□ 0.24
PCDHB1Q9Y5F3 GREM1-201ENST00000560677 623 ntTSL 4 BASIC16.56■□□□□ 0.24
PCDHB1Q9Y5F3 MIR4515-201ENST00000584082 81 ntBASIC16.56■□□□□ 0.24
PCDHB1Q9Y5F3 MED16-214ENST00000617672 554 ntTSL 5 BASIC16.56■□□□□ 0.24
PCDHB1Q9Y5F3 LINC00628-201ENST00000628516 1289 ntBASIC16.56■□□□□ 0.24
PCDHB1Q9Y5F3 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC16.56■□□□□ 0.24
PCDHB1Q9Y5F3 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
PCDHB1Q9Y5F3 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
PCDHB1Q9Y5F3 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
PCDHB1Q9Y5F3 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
PCDHB1Q9Y5F3 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.56■□□□□ 0.24
PCDHB1Q9Y5F3 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
PCDHB1Q9Y5F3 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
PCDHB1Q9Y5F3 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC16.56■□□□□ 0.24
PCDHB1Q9Y5F3 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC16.56■□□□□ 0.24
PCDHB1Q9Y5F3 AL512652.2-201ENST00000625156 1716 ntBASIC16.56■□□□□ 0.24
PCDHB1Q9Y5F3 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
PCDHB1Q9Y5F3 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
PCDHB1Q9Y5F3 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
PCDHB1Q9Y5F3 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
PCDHB1Q9Y5F3 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
PCDHB1Q9Y5F3 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
PCDHB1Q9Y5F3 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
PCDHB1Q9Y5F3 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC16.55■□□□□ 0.24
PCDHB1Q9Y5F3 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
PCDHB1Q9Y5F3 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
PCDHB1Q9Y5F3 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
PCDHB1Q9Y5F3 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC16.55■□□□□ 0.24
PCDHB1Q9Y5F3 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
PCDHB1Q9Y5F3 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
PCDHB1Q9Y5F3 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 260.2 ms