Protein–RNA interactions for Protein: Q9Y3E7

CHMP3, Charged multivesicular body protein 3, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3Q9Y3E7 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CHMP3Q9Y3E7 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CHMP3Q9Y3E7 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
CHMP3Q9Y3E7 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CHMP3Q9Y3E7 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
CHMP3Q9Y3E7 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CHMP3Q9Y3E7 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CHMP3Q9Y3E7 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC20.71■□□□□ 0.91
CHMP3Q9Y3E7 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC20.71■□□□□ 0.91
CHMP3Q9Y3E7 AP000842.3-202ENST00000569238 1080 ntBASIC20.71■□□□□ 0.91
CHMP3Q9Y3E7 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CHMP3Q9Y3E7 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CHMP3Q9Y3E7 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC20.71■□□□□ 0.91
CHMP3Q9Y3E7 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC20.71■□□□□ 0.91
CHMP3Q9Y3E7 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CHMP3Q9Y3E7 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC20.71■□□□□ 0.91
CHMP3Q9Y3E7 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
CHMP3Q9Y3E7 SNX33P1-201ENST00000592116 1762 ntBASIC20.71■□□□□ 0.91
CHMP3Q9Y3E7 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CHMP3Q9Y3E7 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC20.71■□□□□ 0.91
CHMP3Q9Y3E7 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
CHMP3Q9Y3E7 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
CHMP3Q9Y3E7 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
CHMP3Q9Y3E7 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC20.71■□□□□ 0.91
CHMP3Q9Y3E7 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CHMP3Q9Y3E7 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC20.7■□□□□ 0.91
CHMP3Q9Y3E7 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CHMP3Q9Y3E7 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CHMP3Q9Y3E7 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CHMP3Q9Y3E7 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
CHMP3Q9Y3E7 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC20.7■□□□□ 0.9
CHMP3Q9Y3E7 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
CHMP3Q9Y3E7 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
CHMP3Q9Y3E7 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CHMP3Q9Y3E7 PTMS-202ENST00000389462 773 ntTSL 2 BASIC20.7■□□□□ 0.9
CHMP3Q9Y3E7 RPL30-202ENST00000396070 440 ntTSL 2 BASIC20.7■□□□□ 0.9
CHMP3Q9Y3E7 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
CHMP3Q9Y3E7 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC20.7■□□□□ 0.9
CHMP3Q9Y3E7 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CHMP3Q9Y3E7 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC20.7■□□□□ 0.9
CHMP3Q9Y3E7 AC026150.2-201ENST00000564693 1156 ntBASIC20.7■□□□□ 0.9
CHMP3Q9Y3E7 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CHMP3Q9Y3E7 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CHMP3Q9Y3E7 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC20.7■□□□□ 0.9
CHMP3Q9Y3E7 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC20.7■□□□□ 0.9
CHMP3Q9Y3E7 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CHMP3Q9Y3E7 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CHMP3Q9Y3E7 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CHMP3Q9Y3E7 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
CHMP3Q9Y3E7 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC20.7■□□□□ 0.9
CHMP3Q9Y3E7 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CHMP3Q9Y3E7 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CHMP3Q9Y3E7 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CHMP3Q9Y3E7 KRT8P39-201ENST00000396270 1433 ntBASIC20.7■□□□□ 0.9
CHMP3Q9Y3E7 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CHMP3Q9Y3E7 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC20.69■□□□□ 0.9
CHMP3Q9Y3E7 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
CHMP3Q9Y3E7 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC20.69■□□□□ 0.9
CHMP3Q9Y3E7 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CHMP3Q9Y3E7 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
CHMP3Q9Y3E7 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CHMP3Q9Y3E7 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
CHMP3Q9Y3E7 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC20.69■□□□□ 0.9
CHMP3Q9Y3E7 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CHMP3Q9Y3E7 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CHMP3Q9Y3E7 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CHMP3Q9Y3E7 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC20.69■□□□□ 0.9
CHMP3Q9Y3E7 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC20.69■□□□□ 0.9
CHMP3Q9Y3E7 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC20.69■□□□□ 0.9
CHMP3Q9Y3E7 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC20.69■□□□□ 0.9
CHMP3Q9Y3E7 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC20.69■□□□□ 0.9
CHMP3Q9Y3E7 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
CHMP3Q9Y3E7 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
CHMP3Q9Y3E7 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC20.69■□□□□ 0.9
CHMP3Q9Y3E7 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC20.69■□□□□ 0.9
CHMP3Q9Y3E7 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC20.69■□□□□ 0.9
CHMP3Q9Y3E7 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC20.69■□□□□ 0.9
CHMP3Q9Y3E7 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CHMP3Q9Y3E7 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC20.69■□□□□ 0.9
CHMP3Q9Y3E7 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC20.69■□□□□ 0.9
CHMP3Q9Y3E7 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
CHMP3Q9Y3E7 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC20.69■□□□□ 0.9
CHMP3Q9Y3E7 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CHMP3Q9Y3E7 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CHMP3Q9Y3E7 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CHMP3Q9Y3E7 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC20.69■□□□□ 0.9
CHMP3Q9Y3E7 PRORSD1P-202ENST00000563365 2154 ntBASIC20.69■□□□□ 0.9
CHMP3Q9Y3E7 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CHMP3Q9Y3E7 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC20.69■□□□□ 0.9
CHMP3Q9Y3E7 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CHMP3Q9Y3E7 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CHMP3Q9Y3E7 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CHMP3Q9Y3E7 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CHMP3Q9Y3E7 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CHMP3Q9Y3E7 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC20.68■□□□□ 0.9
CHMP3Q9Y3E7 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CHMP3Q9Y3E7 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC20.68■□□□□ 0.9
CHMP3Q9Y3E7 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
CHMP3Q9Y3E7 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC20.68■□□□□ 0.9
CHMP3Q9Y3E7 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 50.1 ms