Protein–RNA interactions for Protein: Q9XRX5

HHLA3, HERV-H LTR-associating protein 3, humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HHLA3Q9XRX5 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC12.2□□□□□ -0.46
HHLA3Q9XRX5 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
HHLA3Q9XRX5 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC12.2□□□□□ -0.46
HHLA3Q9XRX5 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC12.2□□□□□ -0.46
HHLA3Q9XRX5 SCARNA2-201ENST00000458748 420 ntBASIC12.2□□□□□ -0.46
HHLA3Q9XRX5 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC12.2□□□□□ -0.46
HHLA3Q9XRX5 S100A2-206ENST00000497140 697 ntTSL 2 BASIC12.2□□□□□ -0.46
HHLA3Q9XRX5 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
HHLA3Q9XRX5 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
HHLA3Q9XRX5 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC12.2□□□□□ -0.46
HHLA3Q9XRX5 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC12.2□□□□□ -0.46
HHLA3Q9XRX5 CLEC4GP1-201ENST00000596555 870 ntBASIC12.2□□□□□ -0.46
HHLA3Q9XRX5 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
HHLA3Q9XRX5 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC12.2□□□□□ -0.46
HHLA3Q9XRX5 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC12.2□□□□□ -0.46
HHLA3Q9XRX5 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC12.2□□□□□ -0.46
HHLA3Q9XRX5 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC12.2□□□□□ -0.46
HHLA3Q9XRX5 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
HHLA3Q9XRX5 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
HHLA3Q9XRX5 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC12.2□□□□□ -0.46
HHLA3Q9XRX5 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
HHLA3Q9XRX5 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC12.2□□□□□ -0.46
HHLA3Q9XRX5 TCAF2P1-201ENST00000291129 2421 ntBASIC12.2□□□□□ -0.46
HHLA3Q9XRX5 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC12.2□□□□□ -0.46
HHLA3Q9XRX5 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC12.2□□□□□ -0.46
HHLA3Q9XRX5 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
HHLA3Q9XRX5 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC12.2□□□□□ -0.46
HHLA3Q9XRX5 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC12.2□□□□□ -0.46
HHLA3Q9XRX5 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC12.2□□□□□ -0.46
HHLA3Q9XRX5 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC12.2□□□□□ -0.46
HHLA3Q9XRX5 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC12.2□□□□□ -0.46
HHLA3Q9XRX5 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
HHLA3Q9XRX5 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
HHLA3Q9XRX5 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
HHLA3Q9XRX5 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
HHLA3Q9XRX5 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
HHLA3Q9XRX5 AC097637.2-201ENST00000624096 1997 ntBASIC12.19□□□□□ -0.46
HHLA3Q9XRX5 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC12.19□□□□□ -0.46
HHLA3Q9XRX5 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
HHLA3Q9XRX5 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
HHLA3Q9XRX5 AC006058.4-201ENST00000624016 1670 ntBASIC12.19□□□□□ -0.46
HHLA3Q9XRX5 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
HHLA3Q9XRX5 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC12.19□□□□□ -0.46
HHLA3Q9XRX5 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC12.19□□□□□ -0.46
HHLA3Q9XRX5 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC12.19□□□□□ -0.46
HHLA3Q9XRX5 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC12.19□□□□□ -0.46
HHLA3Q9XRX5 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC12.19□□□□□ -0.46
HHLA3Q9XRX5 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
HHLA3Q9XRX5 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
HHLA3Q9XRX5 FAM45BP-202ENST00000592932 1624 ntBASIC12.19□□□□□ -0.46
HHLA3Q9XRX5 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
HHLA3Q9XRX5 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
HHLA3Q9XRX5 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC12.19□□□□□ -0.46
HHLA3Q9XRX5 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
HHLA3Q9XRX5 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC12.19□□□□□ -0.46
HHLA3Q9XRX5 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC12.19□□□□□ -0.46
HHLA3Q9XRX5 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
HHLA3Q9XRX5 MTHFR-217ENST00000641820 1569 ntBASIC12.19□□□□□ -0.46
HHLA3Q9XRX5 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC12.19□□□□□ -0.46
HHLA3Q9XRX5 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC12.19□□□□□ -0.46
HHLA3Q9XRX5 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC12.19□□□□□ -0.46
HHLA3Q9XRX5 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
HHLA3Q9XRX5 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC12.19□□□□□ -0.46
HHLA3Q9XRX5 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC12.19□□□□□ -0.46
HHLA3Q9XRX5 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
HHLA3Q9XRX5 PRYP5-201ENST00000451909 266 ntBASIC12.19□□□□□ -0.46
HHLA3Q9XRX5 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
HHLA3Q9XRX5 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC12.19□□□□□ -0.46
HHLA3Q9XRX5 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC12.19□□□□□ -0.46
HHLA3Q9XRX5 IRF8-202ENST00000562492 946 ntTSL 3 BASIC12.19□□□□□ -0.46
HHLA3Q9XRX5 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC12.19□□□□□ -0.46
HHLA3Q9XRX5 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC12.19□□□□□ -0.46
HHLA3Q9XRX5 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC12.19□□□□□ -0.46
HHLA3Q9XRX5 AC073592.4-201ENST00000623827 446 ntBASIC12.19□□□□□ -0.46
HHLA3Q9XRX5 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC12.19□□□□□ -0.46
HHLA3Q9XRX5 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC12.19□□□□□ -0.46
HHLA3Q9XRX5 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC12.19□□□□□ -0.46
HHLA3Q9XRX5 HLA-DQB2-231ENST00000435145 2026 ntBASIC12.19□□□□□ -0.46
HHLA3Q9XRX5 BLK-205ENST00000529894 2017 ntTSL 5 BASIC12.19□□□□□ -0.46
HHLA3Q9XRX5 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
HHLA3Q9XRX5 TNRC18P2-201ENST00000417666 2714 ntBASIC12.19□□□□□ -0.46
HHLA3Q9XRX5 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
HHLA3Q9XRX5 AC022532.1-201ENST00000624563 1728 ntBASIC12.19□□□□□ -0.46
HHLA3Q9XRX5 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC12.19□□□□□ -0.46
HHLA3Q9XRX5 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC12.19□□□□□ -0.46
HHLA3Q9XRX5 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC12.19□□□□□ -0.46
HHLA3Q9XRX5 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC12.19□□□□□ -0.46
HHLA3Q9XRX5 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC12.19□□□□□ -0.46
HHLA3Q9XRX5 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC12.19□□□□□ -0.46
HHLA3Q9XRX5 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
HHLA3Q9XRX5 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC12.19□□□□□ -0.46
HHLA3Q9XRX5 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
HHLA3Q9XRX5 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC12.19□□□□□ -0.46
HHLA3Q9XRX5 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC12.19□□□□□ -0.46
HHLA3Q9XRX5 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
HHLA3Q9XRX5 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
HHLA3Q9XRX5 AC148477.5-201ENST00000625164 1645 ntBASIC12.19□□□□□ -0.46
HHLA3Q9XRX5 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
HHLA3Q9XRX5 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
HHLA3Q9XRX5 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms