Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC31.19■■■□□ 2.58
SHROOM4Q9ULL8 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC31.19■■■□□ 2.58
SHROOM4Q9ULL8 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC31.19■■■□□ 2.58
SHROOM4Q9ULL8 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC31.18■■■□□ 2.58
SHROOM4Q9ULL8 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC31.18■■■□□ 2.58
SHROOM4Q9ULL8 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC31.18■■■□□ 2.58
SHROOM4Q9ULL8 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC31.18■■■□□ 2.58
SHROOM4Q9ULL8 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
SHROOM4Q9ULL8 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC31.18■■■□□ 2.58
SHROOM4Q9ULL8 GNAQP1-201ENST00000444815 1067 ntBASIC31.18■■■□□ 2.58
SHROOM4Q9ULL8 DOC2GP-202ENST00000514950 1163 ntBASIC31.18■■■□□ 2.58
SHROOM4Q9ULL8 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC31.18■■■□□ 2.58
SHROOM4Q9ULL8 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC31.18■■■□□ 2.58
SHROOM4Q9ULL8 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC31.18■■■□□ 2.58
SHROOM4Q9ULL8 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC31.18■■■□□ 2.58
SHROOM4Q9ULL8 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC31.18■■■□□ 2.58
SHROOM4Q9ULL8 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC31.18■■■□□ 2.58
SHROOM4Q9ULL8 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC31.17■■■□□ 2.58
SHROOM4Q9ULL8 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC31.17■■■□□ 2.58
SHROOM4Q9ULL8 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC31.17■■■□□ 2.58
SHROOM4Q9ULL8 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC31.17■■■□□ 2.58
SHROOM4Q9ULL8 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC31.17■■■□□ 2.58
SHROOM4Q9ULL8 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC31.17■■■□□ 2.58
SHROOM4Q9ULL8 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC31.17■■■□□ 2.58
SHROOM4Q9ULL8 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC31.17■■■□□ 2.58
SHROOM4Q9ULL8 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC31.17■■■□□ 2.58
SHROOM4Q9ULL8 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
SHROOM4Q9ULL8 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC31.17■■■□□ 2.58
SHROOM4Q9ULL8 NEU3-203ENST00000529024 581 ntTSL 3 BASIC31.17■■■□□ 2.58
SHROOM4Q9ULL8 GNAL-204ENST00000535121 1285 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
SHROOM4Q9ULL8 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC31.17■■■□□ 2.58
SHROOM4Q9ULL8 AL079307.3-201ENST00000556114 283 ntBASIC31.17■■■□□ 2.58
SHROOM4Q9ULL8 IGHV3OR16-16-201ENST00000563644 343 ntBASIC31.17■■■□□ 2.58
SHROOM4Q9ULL8 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC31.17■■■□□ 2.58
SHROOM4Q9ULL8 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC31.17■■■□□ 2.58
SHROOM4Q9ULL8 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC31.17■■■□□ 2.58
SHROOM4Q9ULL8 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC31.17■■■□□ 2.58
SHROOM4Q9ULL8 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
SHROOM4Q9ULL8 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC31.17■■■□□ 2.58
SHROOM4Q9ULL8 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
SHROOM4Q9ULL8 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC31.16■■■□□ 2.58
SHROOM4Q9ULL8 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC31.16■■■□□ 2.58
SHROOM4Q9ULL8 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC31.16■■■□□ 2.58
SHROOM4Q9ULL8 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC31.16■■■□□ 2.58
SHROOM4Q9ULL8 AC007389.4-201ENST00000454674 793 ntBASIC31.16■■■□□ 2.58
SHROOM4Q9ULL8 GSTZ1-219ENST00000557639 873 ntTSL 2 BASIC31.16■■■□□ 2.58
SHROOM4Q9ULL8 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC31.16■■■□□ 2.58
SHROOM4Q9ULL8 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC31.16■■■□□ 2.58
SHROOM4Q9ULL8 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC31.16■■■□□ 2.58
SHROOM4Q9ULL8 AC008735.3-201ENST00000596646 500 ntBASIC31.16■■■□□ 2.58
SHROOM4Q9ULL8 RN7SL828P-201ENST00000607615 303 ntBASIC31.16■■■□□ 2.58
SHROOM4Q9ULL8 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC31.16■■■□□ 2.58
SHROOM4Q9ULL8 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC31.16■■■□□ 2.58
SHROOM4Q9ULL8 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC31.16■■■□□ 2.58
SHROOM4Q9ULL8 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
SHROOM4Q9ULL8 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
SHROOM4Q9ULL8 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC31.16■■■□□ 2.58
SHROOM4Q9ULL8 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
SHROOM4Q9ULL8 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC31.15■■■□□ 2.58
SHROOM4Q9ULL8 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC31.15■■■□□ 2.58
SHROOM4Q9ULL8 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC31.15■■■□□ 2.58
SHROOM4Q9ULL8 RN7SL618P-201ENST00000477850 296 ntBASIC31.15■■■□□ 2.58
SHROOM4Q9ULL8 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC31.15■■■□□ 2.58
SHROOM4Q9ULL8 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC31.15■■■□□ 2.58
SHROOM4Q9ULL8 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC31.15■■■□□ 2.58
SHROOM4Q9ULL8 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
SHROOM4Q9ULL8 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC31.15■■■□□ 2.58
SHROOM4Q9ULL8 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC31.15■■■□□ 2.58
SHROOM4Q9ULL8 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
SHROOM4Q9ULL8 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
SHROOM4Q9ULL8 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC31.14■■■□□ 2.58
SHROOM4Q9ULL8 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC31.14■■■□□ 2.58
SHROOM4Q9ULL8 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC31.14■■■□□ 2.58
SHROOM4Q9ULL8 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC31.14■■■□□ 2.58
SHROOM4Q9ULL8 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC31.14■■■□□ 2.58
SHROOM4Q9ULL8 WDR53-204ENST00000433160 887 ntTSL 5 BASIC31.14■■■□□ 2.58
SHROOM4Q9ULL8 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
SHROOM4Q9ULL8 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC31.14■■■□□ 2.58
SHROOM4Q9ULL8 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC31.14■■■□□ 2.58
SHROOM4Q9ULL8 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC31.14■■■□□ 2.58
SHROOM4Q9ULL8 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC31.14■■■□□ 2.58
SHROOM4Q9ULL8 AC092552.1-201ENST00000547243 906 ntBASIC31.14■■■□□ 2.58
SHROOM4Q9ULL8 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC31.14■■■□□ 2.58
SHROOM4Q9ULL8 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC31.14■■■□□ 2.58
SHROOM4Q9ULL8 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC31.14■■■□□ 2.58
SHROOM4Q9ULL8 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC31.14■■■□□ 2.58
SHROOM4Q9ULL8 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC31.14■■■□□ 2.58
SHROOM4Q9ULL8 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC31.14■■■□□ 2.58
SHROOM4Q9ULL8 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC31.14■■■□□ 2.58
SHROOM4Q9ULL8 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC31.14■■■□□ 2.58
SHROOM4Q9ULL8 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC31.14■■■□□ 2.58
SHROOM4Q9ULL8 SPDYE19P-201ENST00000338590 713 ntBASIC31.14■■■□□ 2.57
SHROOM4Q9ULL8 BCYRN1-201ENST00000418539 200 ntBASIC31.14■■■□□ 2.57
SHROOM4Q9ULL8 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC31.14■■■□□ 2.57
SHROOM4Q9ULL8 AL109936.8-201ENST00000641772 604 ntBASIC31.14■■■□□ 2.57
SHROOM4Q9ULL8 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.57
SHROOM4Q9ULL8 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC31.14■■■□□ 2.57
SHROOM4Q9ULL8 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC31.13■■■□□ 2.57
SHROOM4Q9ULL8 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC31.13■■■□□ 2.57
SHROOM4Q9ULL8 GOLGA2P9-201ENST00000596977 1937 ntBASIC31.13■■■□□ 2.57
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms