Protein–RNA interactions for Protein: Q9UI33

SCN11A, Sodium channel protein type 11 subunit alpha, humanhuman

Predictions only

Length 1,791 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN11AQ9UI33 AC087499.6-201ENST00000411576 835 ntBASIC20.95■□□□□ 0.94
SCN11AQ9UI33 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
SCN11AQ9UI33 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SCN11AQ9UI33 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC20.95■□□□□ 0.94
SCN11AQ9UI33 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SCN11AQ9UI33 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC20.95■□□□□ 0.94
SCN11AQ9UI33 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
SCN11AQ9UI33 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
SCN11AQ9UI33 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC20.95■□□□□ 0.94
SCN11AQ9UI33 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC20.95■□□□□ 0.94
SCN11AQ9UI33 LETM1P2-201ENST00000597330 2178 ntBASIC20.95■□□□□ 0.94
SCN11AQ9UI33 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
SCN11AQ9UI33 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
SCN11AQ9UI33 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC20.95■□□□□ 0.94
SCN11AQ9UI33 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
SCN11AQ9UI33 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SCN11AQ9UI33 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SCN11AQ9UI33 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SCN11AQ9UI33 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SCN11AQ9UI33 ARSEP1-201ENST00000420443 635 ntBASIC20.95■□□□□ 0.94
SCN11AQ9UI33 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC20.95■□□□□ 0.94
SCN11AQ9UI33 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
SCN11AQ9UI33 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC20.95■□□□□ 0.94
SCN11AQ9UI33 AC017083.2-201ENST00000608069 979 ntBASIC20.95■□□□□ 0.94
SCN11AQ9UI33 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
SCN11AQ9UI33 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
SCN11AQ9UI33 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC20.95■□□□□ 0.94
SCN11AQ9UI33 LINC01144-201ENST00000626198 1710 ntBASIC20.95■□□□□ 0.94
SCN11AQ9UI33 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC20.94■□□□□ 0.94
SCN11AQ9UI33 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SCN11AQ9UI33 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC20.94■□□□□ 0.94
SCN11AQ9UI33 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
SCN11AQ9UI33 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
SCN11AQ9UI33 UBALD1-205ENST00000590891 2641 ntBASIC20.94■□□□□ 0.94
SCN11AQ9UI33 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
SCN11AQ9UI33 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
SCN11AQ9UI33 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
SCN11AQ9UI33 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC20.94■□□□□ 0.94
SCN11AQ9UI33 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC20.94■□□□□ 0.94
SCN11AQ9UI33 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SCN11AQ9UI33 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC20.94■□□□□ 0.94
SCN11AQ9UI33 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC20.94■□□□□ 0.94
SCN11AQ9UI33 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC20.94■□□□□ 0.94
SCN11AQ9UI33 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
SCN11AQ9UI33 AC093726.1-201ENST00000608064 963 ntBASIC20.94■□□□□ 0.94
SCN11AQ9UI33 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
SCN11AQ9UI33 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC20.94■□□□□ 0.94
SCN11AQ9UI33 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
SCN11AQ9UI33 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
SCN11AQ9UI33 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
SCN11AQ9UI33 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
SCN11AQ9UI33 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SCN11AQ9UI33 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
SCN11AQ9UI33 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC20.93■□□□□ 0.94
SCN11AQ9UI33 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
SCN11AQ9UI33 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC20.93■□□□□ 0.94
SCN11AQ9UI33 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
SCN11AQ9UI33 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
SCN11AQ9UI33 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC20.93■□□□□ 0.94
SCN11AQ9UI33 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC20.93■□□□□ 0.94
SCN11AQ9UI33 AC112492.5-201ENST00000421897 457 ntBASIC20.93■□□□□ 0.94
SCN11AQ9UI33 AC007389.4-201ENST00000454674 793 ntBASIC20.93■□□□□ 0.94
SCN11AQ9UI33 POU5F1P6-201ENST00000466990 990 ntBASIC20.93■□□□□ 0.94
SCN11AQ9UI33 GLI4-203ENST00000517468 963 ntTSL 5 BASIC20.93■□□□□ 0.94
SCN11AQ9UI33 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC20.93■□□□□ 0.94
SCN11AQ9UI33 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
SCN11AQ9UI33 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC20.93■□□□□ 0.94
SCN11AQ9UI33 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
SCN11AQ9UI33 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC20.93■□□□□ 0.94
SCN11AQ9UI33 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
SCN11AQ9UI33 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SCN11AQ9UI33 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SCN11AQ9UI33 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SCN11AQ9UI33 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC20.93■□□□□ 0.94
SCN11AQ9UI33 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SCN11AQ9UI33 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
SCN11AQ9UI33 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SCN11AQ9UI33 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
SCN11AQ9UI33 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC20.92■□□□□ 0.94
SCN11AQ9UI33 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC20.92■□□□□ 0.94
SCN11AQ9UI33 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC20.92■□□□□ 0.94
SCN11AQ9UI33 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC20.92■□□□□ 0.94
SCN11AQ9UI33 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC20.92■□□□□ 0.94
SCN11AQ9UI33 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
SCN11AQ9UI33 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC20.92■□□□□ 0.94
SCN11AQ9UI33 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
SCN11AQ9UI33 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SCN11AQ9UI33 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SCN11AQ9UI33 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
SCN11AQ9UI33 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
SCN11AQ9UI33 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC20.92■□□□□ 0.94
SCN11AQ9UI33 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SCN11AQ9UI33 KRT8P37-201ENST00000451609 1420 ntBASIC20.92■□□□□ 0.94
SCN11AQ9UI33 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC20.92■□□□□ 0.94
SCN11AQ9UI33 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SCN11AQ9UI33 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
SCN11AQ9UI33 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SCN11AQ9UI33 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
SCN11AQ9UI33 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
SCN11AQ9UI33 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms