Protein–RNA interactions for Protein: Q9P218

COL20A1, Collagen alpha-1(XX) chain, humanhuman

Predictions only

Length 1,284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL20A1Q9P218 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL20A1Q9P218 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC18.62■□□□□ 0.57
COL20A1Q9P218 GRAMD4P3-201ENST00000621665 1669 ntBASIC18.62■□□□□ 0.57
COL20A1Q9P218 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL20A1Q9P218 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC18.62■□□□□ 0.57
COL20A1Q9P218 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC18.62■□□□□ 0.57
COL20A1Q9P218 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
COL20A1Q9P218 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC18.62■□□□□ 0.57
COL20A1Q9P218 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL20A1Q9P218 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL20A1Q9P218 FLJ38576-201ENST00000623820 2459 ntBASIC18.62■□□□□ 0.57
COL20A1Q9P218 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC18.62■□□□□ 0.57
COL20A1Q9P218 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
COL20A1Q9P218 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL20A1Q9P218 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC18.61■□□□□ 0.57
COL20A1Q9P218 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL20A1Q9P218 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
COL20A1Q9P218 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL20A1Q9P218 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC18.61■□□□□ 0.57
COL20A1Q9P218 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC18.61■□□□□ 0.57
COL20A1Q9P218 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC18.61■□□□□ 0.57
COL20A1Q9P218 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL20A1Q9P218 AC005622.1-201ENST00000636801 1703 ntBASIC18.61■□□□□ 0.57
COL20A1Q9P218 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC18.61■□□□□ 0.57
COL20A1Q9P218 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC18.61■□□□□ 0.57
COL20A1Q9P218 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL20A1Q9P218 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
COL20A1Q9P218 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
COL20A1Q9P218 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC18.61■□□□□ 0.57
COL20A1Q9P218 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
COL20A1Q9P218 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL20A1Q9P218 HNRNPA3P1-201ENST00000401429 1139 ntBASIC18.61■□□□□ 0.57
COL20A1Q9P218 AL080243.2-201ENST00000418783 582 ntBASIC18.61■□□□□ 0.57
COL20A1Q9P218 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC18.61■□□□□ 0.57
COL20A1Q9P218 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC18.61■□□□□ 0.57
COL20A1Q9P218 COX20P2-201ENST00000452636 358 ntBASIC18.61■□□□□ 0.57
COL20A1Q9P218 TMPRSS11CP-201ENST00000453277 683 ntBASIC18.61■□□□□ 0.57
COL20A1Q9P218 HNRNPA3P5-201ENST00000455201 833 ntBASIC18.61■□□□□ 0.57
COL20A1Q9P218 AL512638.1-201ENST00000457493 794 ntBASIC18.61■□□□□ 0.57
COL20A1Q9P218 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
COL20A1Q9P218 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC18.61■□□□□ 0.57
COL20A1Q9P218 LY6E-204ENST00000519546 971 ntTSL 2 BASIC18.61■□□□□ 0.57
COL20A1Q9P218 YTHDF3-AS1-201ENST00000603538 718 ntBASIC18.61■□□□□ 0.57
COL20A1Q9P218 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
COL20A1Q9P218 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL20A1Q9P218 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL20A1Q9P218 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC18.61■□□□□ 0.57
COL20A1Q9P218 HTR7P1-202ENST00000624664 4411 ntBASIC18.61■□□□□ 0.57
COL20A1Q9P218 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
COL20A1Q9P218 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC18.61■□□□□ 0.57
COL20A1Q9P218 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC18.61■□□□□ 0.57
COL20A1Q9P218 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
COL20A1Q9P218 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC18.6■□□□□ 0.57
COL20A1Q9P218 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL20A1Q9P218 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL20A1Q9P218 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL20A1Q9P218 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
COL20A1Q9P218 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
COL20A1Q9P218 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
COL20A1Q9P218 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
COL20A1Q9P218 TDG-209ENST00000544861 1387 ntTSL 2 BASIC18.6■□□□□ 0.57
COL20A1Q9P218 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL20A1Q9P218 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
COL20A1Q9P218 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL20A1Q9P218 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
COL20A1Q9P218 AC009477.1-201ENST00000452936 217 ntBASIC18.6■□□□□ 0.57
COL20A1Q9P218 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
COL20A1Q9P218 SERBP1P5-201ENST00000510079 1181 ntBASIC18.6■□□□□ 0.57
COL20A1Q9P218 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL20A1Q9P218 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL20A1Q9P218 AL079307.3-201ENST00000556114 283 ntBASIC18.6■□□□□ 0.57
COL20A1Q9P218 AC009407.1-201ENST00000568958 598 ntBASIC18.6■□□□□ 0.57
COL20A1Q9P218 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL20A1Q9P218 AL589739.1-201ENST00000607720 493 ntBASIC18.6■□□□□ 0.57
COL20A1Q9P218 AC008761.3-201ENST00000624803 892 ntBASIC18.6■□□□□ 0.57
COL20A1Q9P218 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL20A1Q9P218 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC18.6■□□□□ 0.57
COL20A1Q9P218 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
COL20A1Q9P218 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC18.6■□□□□ 0.57
COL20A1Q9P218 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
COL20A1Q9P218 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL20A1Q9P218 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL20A1Q9P218 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC18.6■□□□□ 0.57
COL20A1Q9P218 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
COL20A1Q9P218 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL20A1Q9P218 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC18.6■□□□□ 0.57
COL20A1Q9P218 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC18.6■□□□□ 0.57
COL20A1Q9P218 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
COL20A1Q9P218 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL20A1Q9P218 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL20A1Q9P218 CETN4P-206ENST00000642099 2168 ntBASIC18.59■□□□□ 0.57
COL20A1Q9P218 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
COL20A1Q9P218 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL20A1Q9P218 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
COL20A1Q9P218 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC18.59■□□□□ 0.57
COL20A1Q9P218 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL20A1Q9P218 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC18.59■□□□□ 0.57
COL20A1Q9P218 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL20A1Q9P218 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL20A1Q9P218 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms