Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
PCDH9Q9HC56 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC17.16■□□□□ 0.34
PCDH9Q9HC56 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
PCDH9Q9HC56 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
PCDH9Q9HC56 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
PCDH9Q9HC56 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
PCDH9Q9HC56 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
PCDH9Q9HC56 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC17.16■□□□□ 0.34
PCDH9Q9HC56 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PCDH9Q9HC56 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
PCDH9Q9HC56 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
PCDH9Q9HC56 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC17.15■□□□□ 0.34
PCDH9Q9HC56 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PCDH9Q9HC56 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PCDH9Q9HC56 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PCDH9Q9HC56 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
PCDH9Q9HC56 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
PCDH9Q9HC56 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PCDH9Q9HC56 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
PCDH9Q9HC56 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC17.15■□□□□ 0.34
PCDH9Q9HC56 AC009947.1-201ENST00000444350 727 ntBASIC17.15■□□□□ 0.34
PCDH9Q9HC56 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC17.15■□□□□ 0.34
PCDH9Q9HC56 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
PCDH9Q9HC56 BX640515.1-201ENST00000617215 977 ntBASIC17.15■□□□□ 0.34
PCDH9Q9HC56 SLC22A20-204ENST00000530038 1673 ntBASIC17.15■□□□□ 0.34
PCDH9Q9HC56 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PCDH9Q9HC56 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PCDH9Q9HC56 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
PCDH9Q9HC56 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC17.15■□□□□ 0.34
PCDH9Q9HC56 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC17.15■□□□□ 0.34
PCDH9Q9HC56 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
PCDH9Q9HC56 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC17.15■□□□□ 0.34
PCDH9Q9HC56 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC17.15■□□□□ 0.34
PCDH9Q9HC56 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
PCDH9Q9HC56 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
PCDH9Q9HC56 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
PCDH9Q9HC56 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC17.14■□□□□ 0.33
PCDH9Q9HC56 AC006449.6-201ENST00000612330 2296 ntBASIC17.14■□□□□ 0.33
PCDH9Q9HC56 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
PCDH9Q9HC56 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
PCDH9Q9HC56 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC17.14■□□□□ 0.33
PCDH9Q9HC56 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
PCDH9Q9HC56 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
PCDH9Q9HC56 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
PCDH9Q9HC56 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC17.14■□□□□ 0.33
PCDH9Q9HC56 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC17.14■□□□□ 0.33
PCDH9Q9HC56 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
PCDH9Q9HC56 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
PCDH9Q9HC56 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC17.14■□□□□ 0.33
PCDH9Q9HC56 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC17.14■□□□□ 0.33
PCDH9Q9HC56 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC17.14■□□□□ 0.33
PCDH9Q9HC56 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
PCDH9Q9HC56 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
PCDH9Q9HC56 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC17.14■□□□□ 0.33
PCDH9Q9HC56 METTL26-205ENST00000397666 726 ntTSL 2 BASIC17.14■□□□□ 0.33
PCDH9Q9HC56 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC17.14■□□□□ 0.33
PCDH9Q9HC56 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC17.14■□□□□ 0.33
PCDH9Q9HC56 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
PCDH9Q9HC56 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC17.14■□□□□ 0.33
PCDH9Q9HC56 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC17.14■□□□□ 0.33
PCDH9Q9HC56 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC17.14■□□□□ 0.33
PCDH9Q9HC56 CYP2A7P1-201ENST00000595391 815 ntBASIC17.14■□□□□ 0.33
PCDH9Q9HC56 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
PCDH9Q9HC56 Z83851.2-201ENST00000609564 659 ntBASIC17.14■□□□□ 0.33
PCDH9Q9HC56 AC120114.3-201ENST00000611923 658 ntBASIC17.14■□□□□ 0.33
PCDH9Q9HC56 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC17.14■□□□□ 0.33
PCDH9Q9HC56 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
PCDH9Q9HC56 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC17.14■□□□□ 0.33
PCDH9Q9HC56 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
PCDH9Q9HC56 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC17.14■□□□□ 0.33
PCDH9Q9HC56 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
PCDH9Q9HC56 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
PCDH9Q9HC56 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
PCDH9Q9HC56 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
PCDH9Q9HC56 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
PCDH9Q9HC56 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
PCDH9Q9HC56 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
PCDH9Q9HC56 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC17.13■□□□□ 0.33
PCDH9Q9HC56 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
PCDH9Q9HC56 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
PCDH9Q9HC56 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC17.13■□□□□ 0.33
PCDH9Q9HC56 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
PCDH9Q9HC56 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC17.13■□□□□ 0.33
PCDH9Q9HC56 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
PCDH9Q9HC56 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PCDH9Q9HC56 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
PCDH9Q9HC56 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
PCDH9Q9HC56 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC17.13■□□□□ 0.33
PCDH9Q9HC56 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC17.13■□□□□ 0.33
PCDH9Q9HC56 GPAA1P2-202ENST00000606848 1787 ntBASIC17.13■□□□□ 0.33
PCDH9Q9HC56 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC17.13■□□□□ 0.33
PCDH9Q9HC56 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PCDH9Q9HC56 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PCDH9Q9HC56 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC17.13■□□□□ 0.33
PCDH9Q9HC56 PMS2P1-201ENST00000431037 1228 ntBASIC17.13■□□□□ 0.33
PCDH9Q9HC56 RPL13AP23-201ENST00000480739 586 ntBASIC17.13■□□□□ 0.33
PCDH9Q9HC56 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC17.13■□□□□ 0.33
PCDH9Q9HC56 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
PCDH9Q9HC56 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC17.13■□□□□ 0.33
PCDH9Q9HC56 AC107918.2-201ENST00000530817 355 ntBASIC17.13■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms