Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC42Q96M95 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
CCDC42Q96M95 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC42Q96M95 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC42Q96M95 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC42Q96M95 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC42Q96M95 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC42Q96M95 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC42Q96M95 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC17.94■□□□□ 0.46
CCDC42Q96M95 HARS-203ENST00000431330 1774 ntTSL 2 BASIC17.94■□□□□ 0.46
CCDC42Q96M95 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC17.94■□□□□ 0.46
CCDC42Q96M95 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC42Q96M95 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC42Q96M95 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC42Q96M95 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC42Q96M95 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC42Q96M95 PKD1P5-201ENST00000532415 10291 ntBASIC17.94■□□□□ 0.46
CCDC42Q96M95 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC17.94■□□□□ 0.46
CCDC42Q96M95 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC17.94■□□□□ 0.46
CCDC42Q96M95 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
CCDC42Q96M95 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC42Q96M95 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC42Q96M95 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC42Q96M95 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
CCDC42Q96M95 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC42Q96M95 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC42Q96M95 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC42Q96M95 ATP5G2P1-201ENST00000433580 426 ntBASIC17.94■□□□□ 0.46
CCDC42Q96M95 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC17.94■□□□□ 0.46
CCDC42Q96M95 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC42Q96M95 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC17.94■□□□□ 0.46
CCDC42Q96M95 SIGLEC29P-201ENST00000599873 1114 ntBASIC17.94■□□□□ 0.46
CCDC42Q96M95 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC17.94■□□□□ 0.46
CCDC42Q96M95 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC17.94■□□□□ 0.46
CCDC42Q96M95 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC42Q96M95 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC42Q96M95 AC131009.4-201ENST00000624048 1740 ntBASIC17.94■□□□□ 0.46
CCDC42Q96M95 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
CCDC42Q96M95 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC17.94■□□□□ 0.46
CCDC42Q96M95 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC42Q96M95 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC17.94■□□□□ 0.46
CCDC42Q96M95 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC42Q96M95 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC42Q96M95 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC17.93■□□□□ 0.46
CCDC42Q96M95 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
CCDC42Q96M95 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC42Q96M95 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC42Q96M95 MBP-202ENST00000355994 2772 ntTSL 5 BASIC17.93■□□□□ 0.46
CCDC42Q96M95 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC42Q96M95 PCGF3-213ENST00000620529 1899 ntBASIC17.93■□□□□ 0.46
CCDC42Q96M95 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
CCDC42Q96M95 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
CCDC42Q96M95 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC42Q96M95 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC42Q96M95 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC42Q96M95 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC42Q96M95 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC17.93■□□□□ 0.46
CCDC42Q96M95 RBM17P3-201ENST00000417687 1192 ntBASIC17.93■□□□□ 0.46
CCDC42Q96M95 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC17.93■□□□□ 0.46
CCDC42Q96M95 AC087163.2-201ENST00000457299 853 ntBASIC17.93■□□□□ 0.46
CCDC42Q96M95 AC091167.2-201ENST00000579581 588 ntBASIC17.93■□□□□ 0.46
CCDC42Q96M95 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC17.93■□□□□ 0.46
CCDC42Q96M95 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC17.93■□□□□ 0.46
CCDC42Q96M95 REXO1L3P-201ENST00000622202 1288 ntBASIC17.93■□□□□ 0.46
CCDC42Q96M95 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
CCDC42Q96M95 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC42Q96M95 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
CCDC42Q96M95 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC42Q96M95 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC17.93■□□□□ 0.46
CCDC42Q96M95 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC17.93■□□□□ 0.46
CCDC42Q96M95 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC42Q96M95 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC42Q96M95 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC42Q96M95 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC17.93■□□□□ 0.46
CCDC42Q96M95 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC17.93■□□□□ 0.46
CCDC42Q96M95 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC42Q96M95 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
CCDC42Q96M95 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC42Q96M95 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
CCDC42Q96M95 LINC01144-201ENST00000626198 1710 ntBASIC17.92■□□□□ 0.46
CCDC42Q96M95 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC42Q96M95 SUPT20HL2-201ENST00000486479 2409 ntBASIC17.92■□□□□ 0.46
CCDC42Q96M95 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC42Q96M95 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC42Q96M95 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC42Q96M95 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC17.92■□□□□ 0.46
CCDC42Q96M95 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC17.92■□□□□ 0.46
CCDC42Q96M95 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC42Q96M95 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC17.92■□□□□ 0.46
CCDC42Q96M95 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC42Q96M95 COPS8-203ENST00000409334 794 ntTSL 5 BASIC17.92■□□□□ 0.46
CCDC42Q96M95 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC42Q96M95 POU5F1P6-201ENST00000466990 990 ntBASIC17.92■□□□□ 0.46
CCDC42Q96M95 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC17.92■□□□□ 0.46
CCDC42Q96M95 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC17.92■□□□□ 0.46
CCDC42Q96M95 AC139887.3-201ENST00000568585 713 ntBASIC17.92■□□□□ 0.46
CCDC42Q96M95 AF228730.7-201ENST00000641842 219 ntBASIC17.92■□□□□ 0.46
CCDC42Q96M95 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
CCDC42Q96M95 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
CCDC42Q96M95 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms