Protein–RNA interactions for Protein: Q96K76

USP47, Ubiquitin carboxyl-terminal hydrolase 47, humanhuman

Predictions only

Length 1,375 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP47Q96K76 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC23.08■■□□□ 1.28
USP47Q96K76 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC23.08■■□□□ 1.28
USP47Q96K76 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC23.08■■□□□ 1.28
USP47Q96K76 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC23.07■■□□□ 1.28
USP47Q96K76 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
USP47Q96K76 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC23.07■■□□□ 1.28
USP47Q96K76 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC23.07■■□□□ 1.28
USP47Q96K76 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
USP47Q96K76 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC23.07■■□□□ 1.28
USP47Q96K76 ALG1L8P-201ENST00000533887 760 ntBASIC23.07■■□□□ 1.28
USP47Q96K76 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC23.07■■□□□ 1.28
USP47Q96K76 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC23.07■■□□□ 1.28
USP47Q96K76 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC23.07■■□□□ 1.28
USP47Q96K76 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC23.07■■□□□ 1.28
USP47Q96K76 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC23.07■■□□□ 1.28
USP47Q96K76 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC23.07■■□□□ 1.28
USP47Q96K76 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
USP47Q96K76 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC23.07■■□□□ 1.28
USP47Q96K76 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC23.07■■□□□ 1.28
USP47Q96K76 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC23.07■■□□□ 1.28
USP47Q96K76 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
USP47Q96K76 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC23.07■■□□□ 1.28
USP47Q96K76 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC23.07■■□□□ 1.28
USP47Q96K76 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC23.06■■□□□ 1.28
USP47Q96K76 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC23.06■■□□□ 1.28
USP47Q96K76 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
USP47Q96K76 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC23.06■■□□□ 1.28
USP47Q96K76 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC23.06■■□□□ 1.28
USP47Q96K76 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
USP47Q96K76 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC23.06■■□□□ 1.28
USP47Q96K76 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC23.06■■□□□ 1.28
USP47Q96K76 PP14571-201ENST00000404327 934 ntTSL 2 BASIC23.06■■□□□ 1.28
USP47Q96K76 RBPMS2P1-201ENST00000437762 623 ntBASIC23.06■■□□□ 1.28
USP47Q96K76 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC23.06■■□□□ 1.28
USP47Q96K76 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC23.06■■□□□ 1.28
USP47Q96K76 AC026150.2-201ENST00000564693 1156 ntBASIC23.06■■□□□ 1.28
USP47Q96K76 SPTSSB-204ENST00000617024 1292 ntBASIC23.06■■□□□ 1.28
USP47Q96K76 AP001059.3-201ENST00000619053 235 ntBASIC23.06■■□□□ 1.28
USP47Q96K76 LINC00628-201ENST00000628516 1289 ntBASIC23.06■■□□□ 1.28
USP47Q96K76 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC23.06■■□□□ 1.28
USP47Q96K76 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC23.06■■□□□ 1.28
USP47Q96K76 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC23.06■■□□□ 1.28
USP47Q96K76 REXO1L8P-201ENST00000604378 1897 ntBASIC23.06■■□□□ 1.28
USP47Q96K76 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
USP47Q96K76 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC23.06■■□□□ 1.28
USP47Q96K76 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
USP47Q96K76 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC23.06■■□□□ 1.28
USP47Q96K76 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
USP47Q96K76 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
USP47Q96K76 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
USP47Q96K76 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC23.05■■□□□ 1.28
USP47Q96K76 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC23.05■■□□□ 1.28
USP47Q96K76 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC23.05■■□□□ 1.28
USP47Q96K76 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC23.05■■□□□ 1.28
USP47Q96K76 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
USP47Q96K76 HLA-H-201ENST00000383620 1096 ntBASIC23.05■■□□□ 1.28
USP47Q96K76 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC23.05■■□□□ 1.28
USP47Q96K76 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC23.05■■□□□ 1.28
USP47Q96K76 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC23.05■■□□□ 1.28
USP47Q96K76 RARRES2P9-201ENST00000565168 469 ntBASIC23.05■■□□□ 1.28
USP47Q96K76 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC23.05■■□□□ 1.28
USP47Q96K76 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC23.05■■□□□ 1.28
USP47Q96K76 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC23.05■■□□□ 1.28
USP47Q96K76 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC23.05■■□□□ 1.28
USP47Q96K76 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC23.05■■□□□ 1.28
USP47Q96K76 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
USP47Q96K76 AC092364.2-201ENST00000596710 2692 ntBASIC23.05■■□□□ 1.28
USP47Q96K76 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC23.05■■□□□ 1.28
USP47Q96K76 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
USP47Q96K76 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC23.05■■□□□ 1.28
USP47Q96K76 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC23.05■■□□□ 1.28
USP47Q96K76 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC23.05■■□□□ 1.28
USP47Q96K76 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
USP47Q96K76 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
USP47Q96K76 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
USP47Q96K76 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC23.04■■□□□ 1.28
USP47Q96K76 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC23.04■■□□□ 1.28
USP47Q96K76 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC23.04■■□□□ 1.28
USP47Q96K76 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
USP47Q96K76 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC23.04■■□□□ 1.28
USP47Q96K76 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC23.04■■□□□ 1.28
USP47Q96K76 RPL30-202ENST00000396070 440 ntTSL 2 BASIC23.04■■□□□ 1.28
USP47Q96K76 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC23.04■■□□□ 1.28
USP47Q96K76 AC098859.1-201ENST00000502915 1238 ntBASIC23.04■■□□□ 1.28
USP47Q96K76 DAD1-205ENST00000543337 501 ntTSL 3 BASIC23.04■■□□□ 1.28
USP47Q96K76 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC23.04■■□□□ 1.28
USP47Q96K76 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC23.04■■□□□ 1.28
USP47Q96K76 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC23.04■■□□□ 1.28
USP47Q96K76 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC23.04■■□□□ 1.28
USP47Q96K76 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC23.04■■□□□ 1.28
USP47Q96K76 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC23.04■■□□□ 1.28
USP47Q96K76 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
USP47Q96K76 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
USP47Q96K76 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC23.04■■□□□ 1.28
USP47Q96K76 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC23.04■■□□□ 1.28
USP47Q96K76 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC23.04■■□□□ 1.28
USP47Q96K76 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC23.04■■□□□ 1.28
USP47Q96K76 AL118508.1-201ENST00000613502 2345 ntBASIC23.04■■□□□ 1.28
USP47Q96K76 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
USP47Q96K76 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC23.04■■□□□ 1.28
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms