Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
CLIP3Q96DZ5 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC16.07■□□□□ 0.16
CLIP3Q96DZ5 AP000344.2-201ENST00000512987 629 ntBASIC16.07■□□□□ 0.16
CLIP3Q96DZ5 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC16.07■□□□□ 0.16
CLIP3Q96DZ5 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC16.07■□□□□ 0.16
CLIP3Q96DZ5 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC16.07■□□□□ 0.16
CLIP3Q96DZ5 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC16.07■□□□□ 0.16
CLIP3Q96DZ5 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
CLIP3Q96DZ5 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CLIP3Q96DZ5 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC16.07■□□□□ 0.16
CLIP3Q96DZ5 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
CLIP3Q96DZ5 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
CLIP3Q96DZ5 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC16.07■□□□□ 0.16
CLIP3Q96DZ5 HARS-203ENST00000431330 1774 ntTSL 2 BASIC16.07■□□□□ 0.16
CLIP3Q96DZ5 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CLIP3Q96DZ5 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
CLIP3Q96DZ5 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CLIP3Q96DZ5 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC16.07■□□□□ 0.16
CLIP3Q96DZ5 SGK1-205ENST00000413996 2686 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CLIP3Q96DZ5 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CLIP3Q96DZ5 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC16.07■□□□□ 0.16
CLIP3Q96DZ5 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC16.07■□□□□ 0.16
CLIP3Q96DZ5 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
CLIP3Q96DZ5 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
CLIP3Q96DZ5 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CLIP3Q96DZ5 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CLIP3Q96DZ5 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CLIP3Q96DZ5 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC16.06■□□□□ 0.16
CLIP3Q96DZ5 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC16.06■□□□□ 0.16
CLIP3Q96DZ5 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
CLIP3Q96DZ5 NFATC4-221ENST00000555453 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
CLIP3Q96DZ5 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CLIP3Q96DZ5 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
CLIP3Q96DZ5 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
CLIP3Q96DZ5 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CLIP3Q96DZ5 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CLIP3Q96DZ5 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CLIP3Q96DZ5 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
CLIP3Q96DZ5 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
CLIP3Q96DZ5 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
CLIP3Q96DZ5 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CLIP3Q96DZ5 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC16.06■□□□□ 0.16
CLIP3Q96DZ5 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
CLIP3Q96DZ5 AC027796.2-201ENST00000575326 344 ntBASIC16.06■□□□□ 0.16
CLIP3Q96DZ5 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC16.06■□□□□ 0.16
CLIP3Q96DZ5 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CLIP3Q96DZ5 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CLIP3Q96DZ5 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CLIP3Q96DZ5 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC16.06■□□□□ 0.16
CLIP3Q96DZ5 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
CLIP3Q96DZ5 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC16.06■□□□□ 0.16
CLIP3Q96DZ5 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CLIP3Q96DZ5 AC005052.1-201ENST00000625181 2492 ntBASIC16.06■□□□□ 0.16
CLIP3Q96DZ5 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CLIP3Q96DZ5 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
CLIP3Q96DZ5 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CLIP3Q96DZ5 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CLIP3Q96DZ5 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
CLIP3Q96DZ5 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CLIP3Q96DZ5 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC16.05■□□□□ 0.16
CLIP3Q96DZ5 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CLIP3Q96DZ5 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC16.05■□□□□ 0.16
CLIP3Q96DZ5 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC16.05■□□□□ 0.16
CLIP3Q96DZ5 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
CLIP3Q96DZ5 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC16.05■□□□□ 0.16
CLIP3Q96DZ5 AC012569.1-201ENST00000591191 1524 ntBASIC16.05■□□□□ 0.16
CLIP3Q96DZ5 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC16.05■□□□□ 0.16
CLIP3Q96DZ5 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CLIP3Q96DZ5 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
CLIP3Q96DZ5 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CLIP3Q96DZ5 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC16.05■□□□□ 0.16
CLIP3Q96DZ5 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
CLIP3Q96DZ5 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CLIP3Q96DZ5 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC16.05■□□□□ 0.16
CLIP3Q96DZ5 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CLIP3Q96DZ5 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
CLIP3Q96DZ5 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC16.05■□□□□ 0.16
CLIP3Q96DZ5 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CLIP3Q96DZ5 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC16.05■□□□□ 0.16
CLIP3Q96DZ5 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CLIP3Q96DZ5 AC140658.5-201ENST00000438532 169 ntBASIC16.05■□□□□ 0.16
CLIP3Q96DZ5 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
CLIP3Q96DZ5 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC16.05■□□□□ 0.16
CLIP3Q96DZ5 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC16.05■□□□□ 0.16
CLIP3Q96DZ5 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC16.05■□□□□ 0.16
CLIP3Q96DZ5 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
CLIP3Q96DZ5 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC16.05■□□□□ 0.16
CLIP3Q96DZ5 AC004835.2-201ENST00000603762 682 ntBASIC16.05■□□□□ 0.16
CLIP3Q96DZ5 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC16.05■□□□□ 0.16
CLIP3Q96DZ5 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CLIP3Q96DZ5 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CLIP3Q96DZ5 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
CLIP3Q96DZ5 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
CLIP3Q96DZ5 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CLIP3Q96DZ5 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC16.05■□□□□ 0.16
CLIP3Q96DZ5 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CLIP3Q96DZ5 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CLIP3Q96DZ5 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CLIP3Q96DZ5 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CLIP3Q96DZ5 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms