Protein–RNA interactions for Protein: Q8IZC6

COL27A1, Collagen alpha-1(XXVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1Q8IZC6 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC15.32■□□□□ 0.04
COL27A1Q8IZC6 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC15.32■□□□□ 0.04
COL27A1Q8IZC6 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
COL27A1Q8IZC6 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC15.32■□□□□ 0.04
COL27A1Q8IZC6 RPF1-202ENST00000370656 724 ntTSL 2 BASIC15.32■□□□□ 0.04
COL27A1Q8IZC6 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC15.32■□□□□ 0.04
COL27A1Q8IZC6 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC15.32■□□□□ 0.04
COL27A1Q8IZC6 NME4-207ENST00000450036 985 ntTSL 3 BASIC15.32■□□□□ 0.04
COL27A1Q8IZC6 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC15.32■□□□□ 0.04
COL27A1Q8IZC6 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC15.32■□□□□ 0.04
COL27A1Q8IZC6 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC15.32■□□□□ 0.04
COL27A1Q8IZC6 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC15.32■□□□□ 0.04
COL27A1Q8IZC6 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC15.32■□□□□ 0.04
COL27A1Q8IZC6 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
COL27A1Q8IZC6 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC15.32■□□□□ 0.04
COL27A1Q8IZC6 MIR6799-201ENST00000620297 69 ntBASIC15.32■□□□□ 0.04
COL27A1Q8IZC6 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
COL27A1Q8IZC6 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
COL27A1Q8IZC6 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC15.32■□□□□ 0.04
COL27A1Q8IZC6 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
COL27A1Q8IZC6 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
COL27A1Q8IZC6 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
COL27A1Q8IZC6 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
COL27A1Q8IZC6 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC15.32■□□□□ 0.04
COL27A1Q8IZC6 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
COL27A1Q8IZC6 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC15.32■□□□□ 0.04
COL27A1Q8IZC6 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
COL27A1Q8IZC6 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC15.31■□□□□ 0.04
COL27A1Q8IZC6 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
COL27A1Q8IZC6 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL27A1Q8IZC6 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
COL27A1Q8IZC6 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC15.31■□□□□ 0.04
COL27A1Q8IZC6 PACS1-203ENST00000524815 628 ntTSL 4 BASIC15.31■□□□□ 0.04
COL27A1Q8IZC6 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
COL27A1Q8IZC6 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC15.31■□□□□ 0.04
COL27A1Q8IZC6 AL033527.5-201ENST00000641382 801 ntBASIC15.31■□□□□ 0.04
COL27A1Q8IZC6 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL27A1Q8IZC6 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL27A1Q8IZC6 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
COL27A1Q8IZC6 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL27A1Q8IZC6 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL27A1Q8IZC6 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL27A1Q8IZC6 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL27A1Q8IZC6 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
COL27A1Q8IZC6 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC15.31■□□□□ 0.04
COL27A1Q8IZC6 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC15.31■□□□□ 0.04
COL27A1Q8IZC6 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC15.31■□□□□ 0.04
COL27A1Q8IZC6 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC15.31■□□□□ 0.04
COL27A1Q8IZC6 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL27A1Q8IZC6 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL27A1Q8IZC6 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC15.31■□□□□ 0.04
COL27A1Q8IZC6 FO393414.2-201ENST00000405153 598 ntBASIC15.31■□□□□ 0.04
COL27A1Q8IZC6 AC074338.1-201ENST00000416825 156 ntBASIC15.31■□□□□ 0.04
COL27A1Q8IZC6 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC15.31■□□□□ 0.04
COL27A1Q8IZC6 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC15.31■□□□□ 0.04
COL27A1Q8IZC6 KRT18P64-201ENST00000434946 1219 ntBASIC15.31■□□□□ 0.04
COL27A1Q8IZC6 AL355994.2-201ENST00000447882 704 ntBASIC15.31■□□□□ 0.04
COL27A1Q8IZC6 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC15.31■□□□□ 0.04
COL27A1Q8IZC6 USB1-203ENST00000539737 1212 ntTSL 2 BASIC15.31■□□□□ 0.04
COL27A1Q8IZC6 NOP2-211ENST00000540228 668 ntTSL 2 BASIC15.31■□□□□ 0.04
COL27A1Q8IZC6 PAM16-215ENST00000577031 548 ntTSL 4 BASIC15.31■□□□□ 0.04
COL27A1Q8IZC6 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC15.31■□□□□ 0.04
COL27A1Q8IZC6 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC15.31■□□□□ 0.04
COL27A1Q8IZC6 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
COL27A1Q8IZC6 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL27A1Q8IZC6 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC15.31■□□□□ 0.04
COL27A1Q8IZC6 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC15.31■□□□□ 0.04
COL27A1Q8IZC6 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL27A1Q8IZC6 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL27A1Q8IZC6 HNRNPA1P48-201ENST00000562726 1377 ntBASIC15.3■□□□□ 0.04
COL27A1Q8IZC6 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL27A1Q8IZC6 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL27A1Q8IZC6 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC15.3■□□□□ 0.04
COL27A1Q8IZC6 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
COL27A1Q8IZC6 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
COL27A1Q8IZC6 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC15.3■□□□□ 0.04
COL27A1Q8IZC6 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL27A1Q8IZC6 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL27A1Q8IZC6 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
COL27A1Q8IZC6 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
COL27A1Q8IZC6 TOMM22P5-201ENST00000416399 439 ntBASIC15.3■□□□□ 0.04
COL27A1Q8IZC6 AC099336.1-201ENST00000417053 1171 ntBASIC15.3■□□□□ 0.04
COL27A1Q8IZC6 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC15.3■□□□□ 0.04
COL27A1Q8IZC6 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC15.3■□□□□ 0.04
COL27A1Q8IZC6 RN7SL399P-201ENST00000471648 279 ntBASIC15.3■□□□□ 0.04
COL27A1Q8IZC6 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC15.3■□□□□ 0.04
COL27A1Q8IZC6 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
COL27A1Q8IZC6 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC15.3■□□□□ 0.04
COL27A1Q8IZC6 MIR4538-201ENST00000581377 78 ntBASIC15.3■□□□□ 0.04
COL27A1Q8IZC6 RPS24-214ENST00000613865 538 ntTSL 5 BASIC15.3■□□□□ 0.04
COL27A1Q8IZC6 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
COL27A1Q8IZC6 RABEPK-201ENST00000259460 1313 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
COL27A1Q8IZC6 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL27A1Q8IZC6 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL27A1Q8IZC6 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL27A1Q8IZC6 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
COL27A1Q8IZC6 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL27A1Q8IZC6 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL27A1Q8IZC6 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
COL27A1Q8IZC6 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC15.29■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms