Protein–RNA interactions for Protein: Q7M4L6

SHF, SH2 domain-containing adapter protein F, humanhuman

Predictions only

Length 423 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHFQ7M4L6 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC15.07■□□□□ 0
SHFQ7M4L6 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC15.07■□□□□ 0
SHFQ7M4L6 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC15.07■□□□□ 0
SHFQ7M4L6 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC15.07■□□□□ 0
SHFQ7M4L6 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
SHFQ7M4L6 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC15.07■□□□□ 0
SHFQ7M4L6 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC15.07■□□□□ 0
SHFQ7M4L6 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
SHFQ7M4L6 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
SHFQ7M4L6 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC15.07■□□□□ 0
SHFQ7M4L6 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
SHFQ7M4L6 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC15.07■□□□□ 0
SHFQ7M4L6 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
SHFQ7M4L6 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC15.07■□□□□ 0
SHFQ7M4L6 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC15.07■□□□□ 0
SHFQ7M4L6 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC15.07■□□□□ 0
SHFQ7M4L6 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
SHFQ7M4L6 AC092384.3-202ENST00000564646 2873 ntBASIC15.07■□□□□ 0
SHFQ7M4L6 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC15.06■□□□□ 0
SHFQ7M4L6 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC15.06■□□□□ 0
SHFQ7M4L6 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
SHFQ7M4L6 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC15.06■□□□□ 0
SHFQ7M4L6 SUPT20HL2-201ENST00000486479 2409 ntBASIC15.06■□□□□ 0
SHFQ7M4L6 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
SHFQ7M4L6 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC15.06■□□□□ 0
SHFQ7M4L6 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC15.06■□□□□ 0
SHFQ7M4L6 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
SHFQ7M4L6 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
SHFQ7M4L6 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
SHFQ7M4L6 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC15.06■□□□□ 0
SHFQ7M4L6 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC15.06■□□□□ 0
SHFQ7M4L6 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC15.06■□□□□ 0
SHFQ7M4L6 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
SHFQ7M4L6 AP002414.1-201ENST00000391405 1147 ntBASIC15.06■□□□□ 0
SHFQ7M4L6 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC15.06■□□□□ 0
SHFQ7M4L6 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC15.06■□□□□ 0
SHFQ7M4L6 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC15.06■□□□□ 0
SHFQ7M4L6 FAM210CP-201ENST00000445714 574 ntBASIC15.06■□□□□ 0
SHFQ7M4L6 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC15.06■□□□□ 0
SHFQ7M4L6 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC15.06■□□□□ 0
SHFQ7M4L6 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC15.06■□□□□ 0
SHFQ7M4L6 AL603832.2-201ENST00000566195 2125 ntBASIC15.06■□□□□ 0
SHFQ7M4L6 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC15.06■□□□□ 0
SHFQ7M4L6 BCL10-202ENST00000620248 774 ntTSL 5 BASIC15.06■□□□□ 0
SHFQ7M4L6 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC15.06■□□□□ 0
SHFQ7M4L6 AC073592.4-201ENST00000623827 446 ntBASIC15.06■□□□□ 0
SHFQ7M4L6 AC063926.3-201ENST00000624734 5658 ntBASIC15.06■□□□□ 0
SHFQ7M4L6 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC15.06■□□□□ 0
SHFQ7M4L6 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
SHFQ7M4L6 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
SHFQ7M4L6 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
SHFQ7M4L6 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC15.06■□□□□ 0
SHFQ7M4L6 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC15.06■□□□□ 0
SHFQ7M4L6 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC15.06■□□□□ 0
SHFQ7M4L6 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
SHFQ7M4L6 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC15.06■□□□□ 0
SHFQ7M4L6 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC15.06■□□□□ 0
SHFQ7M4L6 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
SHFQ7M4L6 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC15.06■□□□□ 0
SHFQ7M4L6 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC15.06■□□□□ 0
SHFQ7M4L6 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC15.06■□□□□ 0
SHFQ7M4L6 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC15.05■□□□□ 0
SHFQ7M4L6 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
SHFQ7M4L6 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
SHFQ7M4L6 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC15.05■□□□□ 0
SHFQ7M4L6 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ 0
SHFQ7M4L6 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC15.05■□□□□ 0
SHFQ7M4L6 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
SHFQ7M4L6 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC15.05■□□□□ 0
SHFQ7M4L6 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ 0
SHFQ7M4L6 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC15.05■□□□□ -0
SHFQ7M4L6 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC15.05■□□□□ -0
SHFQ7M4L6 NABP1-203ENST00000409510 843 ntTSL 5 BASIC15.05■□□□□ -0
SHFQ7M4L6 LINC00982-205ENST00000420957 435 ntBASIC15.05■□□□□ -0
SHFQ7M4L6 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC15.05■□□□□ -0
SHFQ7M4L6 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC15.05■□□□□ -0
SHFQ7M4L6 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC15.05■□□□□ -0
SHFQ7M4L6 MIR5100-201ENST00000579544 119 ntBASIC15.05■□□□□ -0
SHFQ7M4L6 MIR3180-1-201ENST00000580374 94 ntBASIC15.05■□□□□ -0
SHFQ7M4L6 MIR3180-3-201ENST00000584616 94 ntBASIC15.05■□□□□ -0
SHFQ7M4L6 COPE-211ENST00000600932 1144 ntTSL 5 BASIC15.05■□□□□ -0
SHFQ7M4L6 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC15.05■□□□□ -0
SHFQ7M4L6 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC15.05■□□□□ -0
SHFQ7M4L6 AC069148.1-201ENST00000608741 768 ntBASIC15.05■□□□□ -0
SHFQ7M4L6 AC010331.1-201ENST00000611423 582 ntBASIC15.05■□□□□ -0
SHFQ7M4L6 CCNC-219ENST00000627680 896 ntTSL 5 BASIC15.05■□□□□ -0
SHFQ7M4L6 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC15.05■□□□□ -0
SHFQ7M4L6 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC15.05■□□□□ -0
SHFQ7M4L6 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC15.05■□□□□ -0
SHFQ7M4L6 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
SHFQ7M4L6 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
SHFQ7M4L6 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ -0
SHFQ7M4L6 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC15.05■□□□□ -0
SHFQ7M4L6 KRT8P49-201ENST00000604166 1432 ntBASIC15.05■□□□□ -0
SHFQ7M4L6 AC006277.1-201ENST00000624348 1610 ntBASIC15.05■□□□□ -0
SHFQ7M4L6 AC079776.2-201ENST00000641154 1609 ntBASIC15.05■□□□□ -0
SHFQ7M4L6 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC15.05■□□□□ -0
SHFQ7M4L6 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC15.05■□□□□ -0
SHFQ7M4L6 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC15.05■□□□□ -0
SHFQ7M4L6 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms