Protein–RNA interactions for Protein: Q68DV7

RNF43, E3 ubiquitin-protein ligase RNF43, humanhuman

Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF43Q68DV7 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC17.42■□□□□ 0.38
RNF43Q68DV7 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
RNF43Q68DV7 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC17.42■□□□□ 0.38
RNF43Q68DV7 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
RNF43Q68DV7 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
RNF43Q68DV7 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
RNF43Q68DV7 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
RNF43Q68DV7 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC17.42■□□□□ 0.38
RNF43Q68DV7 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC17.42■□□□□ 0.38
RNF43Q68DV7 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC17.42■□□□□ 0.38
RNF43Q68DV7 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC17.42■□□□□ 0.38
RNF43Q68DV7 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
RNF43Q68DV7 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC17.42■□□□□ 0.38
RNF43Q68DV7 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
RNF43Q68DV7 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
RNF43Q68DV7 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
RNF43Q68DV7 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
RNF43Q68DV7 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
RNF43Q68DV7 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
RNF43Q68DV7 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC17.41■□□□□ 0.38
RNF43Q68DV7 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
RNF43Q68DV7 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
RNF43Q68DV7 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
RNF43Q68DV7 CD99-202ENST00000381180 530 ntTSL 2 BASIC17.41■□□□□ 0.38
RNF43Q68DV7 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC17.41■□□□□ 0.38
RNF43Q68DV7 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC17.41■□□□□ 0.38
RNF43Q68DV7 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC17.41■□□□□ 0.38
RNF43Q68DV7 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC17.41■□□□□ 0.38
RNF43Q68DV7 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC17.41■□□□□ 0.38
RNF43Q68DV7 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC17.41■□□□□ 0.38
RNF43Q68DV7 AC004449.1-201ENST00000564240 433 ntBASIC17.41■□□□□ 0.38
RNF43Q68DV7 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC17.41■□□□□ 0.38
RNF43Q68DV7 BSG-214ENST00000614867 960 ntTSL 3 BASIC17.41■□□□□ 0.38
RNF43Q68DV7 CITED2-204ENST00000618718 901 ntTSL 2 BASIC17.41■□□□□ 0.38
RNF43Q68DV7 AL645728.2-201ENST00000641974 660 ntBASIC17.41■□□□□ 0.38
RNF43Q68DV7 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
RNF43Q68DV7 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC17.41■□□□□ 0.38
RNF43Q68DV7 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
RNF43Q68DV7 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
RNF43Q68DV7 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC17.41■□□□□ 0.38
RNF43Q68DV7 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
RNF43Q68DV7 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
RNF43Q68DV7 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC17.41■□□□□ 0.38
RNF43Q68DV7 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
RNF43Q68DV7 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
RNF43Q68DV7 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
RNF43Q68DV7 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
RNF43Q68DV7 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC17.41■□□□□ 0.38
RNF43Q68DV7 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
RNF43Q68DV7 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC17.41■□□□□ 0.38
RNF43Q68DV7 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
RNF43Q68DV7 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC17.41■□□□□ 0.38
RNF43Q68DV7 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC17.41■□□□□ 0.38
RNF43Q68DV7 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
RNF43Q68DV7 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
RNF43Q68DV7 HARS-203ENST00000431330 1774 ntTSL 2 BASIC17.4■□□□□ 0.38
RNF43Q68DV7 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
RNF43Q68DV7 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
RNF43Q68DV7 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
RNF43Q68DV7 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
RNF43Q68DV7 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC17.4■□□□□ 0.38
RNF43Q68DV7 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC17.4■□□□□ 0.38
RNF43Q68DV7 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
RNF43Q68DV7 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
RNF43Q68DV7 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
RNF43Q68DV7 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
RNF43Q68DV7 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
RNF43Q68DV7 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
RNF43Q68DV7 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
RNF43Q68DV7 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC17.4■□□□□ 0.38
RNF43Q68DV7 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
RNF43Q68DV7 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
RNF43Q68DV7 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
RNF43Q68DV7 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
RNF43Q68DV7 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC17.4■□□□□ 0.38
RNF43Q68DV7 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC17.4■□□□□ 0.38
RNF43Q68DV7 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC17.4■□□□□ 0.38
RNF43Q68DV7 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC17.4■□□□□ 0.38
RNF43Q68DV7 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC17.4■□□□□ 0.38
RNF43Q68DV7 AC124947.2-201ENST00000547118 1133 ntBASIC17.4■□□□□ 0.38
RNF43Q68DV7 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
RNF43Q68DV7 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
RNF43Q68DV7 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC17.4■□□□□ 0.38
RNF43Q68DV7 AC068137.2-201ENST00000605408 478 ntBASIC17.4■□□□□ 0.38
RNF43Q68DV7 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
RNF43Q68DV7 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC17.4■□□□□ 0.38
RNF43Q68DV7 LINC02012-201ENST00000608206 1725 ntBASIC17.4■□□□□ 0.38
RNF43Q68DV7 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
RNF43Q68DV7 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
RNF43Q68DV7 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
RNF43Q68DV7 REM2-202ENST00000536884 1331 ntTSL 2 BASIC17.4■□□□□ 0.38
RNF43Q68DV7 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
RNF43Q68DV7 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
RNF43Q68DV7 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
RNF43Q68DV7 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
RNF43Q68DV7 TOP3BP1-201ENST00000420768 1380 ntBASIC17.4■□□□□ 0.38
RNF43Q68DV7 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
RNF43Q68DV7 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
RNF43Q68DV7 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
RNF43Q68DV7 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 43.3 ms