Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
COL28A1Q2UY09 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
COL28A1Q2UY09 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC15.97■□□□□ 0.15
COL28A1Q2UY09 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC15.97■□□□□ 0.15
COL28A1Q2UY09 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
COL28A1Q2UY09 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
COL28A1Q2UY09 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
COL28A1Q2UY09 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC15.96■□□□□ 0.15
COL28A1Q2UY09 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC15.96■□□□□ 0.15
COL28A1Q2UY09 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC15.96■□□□□ 0.15
COL28A1Q2UY09 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
COL28A1Q2UY09 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
COL28A1Q2UY09 AL513477.1-201ENST00000602865 2407 ntBASIC15.96■□□□□ 0.15
COL28A1Q2UY09 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC15.96■□□□□ 0.15
COL28A1Q2UY09 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC15.96■□□□□ 0.15
COL28A1Q2UY09 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
COL28A1Q2UY09 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC15.96■□□□□ 0.15
COL28A1Q2UY09 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
COL28A1Q2UY09 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
COL28A1Q2UY09 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
COL28A1Q2UY09 AC098614.1-201ENST00000368528 745 ntBASIC15.96■□□□□ 0.15
COL28A1Q2UY09 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
COL28A1Q2UY09 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
COL28A1Q2UY09 HLA-DPB2-205ENST00000435074 1188 ntBASIC15.96■□□□□ 0.15
COL28A1Q2UY09 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC15.96■□□□□ 0.15
COL28A1Q2UY09 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC15.96■□□□□ 0.15
COL28A1Q2UY09 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC15.96■□□□□ 0.15
COL28A1Q2UY09 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC15.96■□□□□ 0.15
COL28A1Q2UY09 GATD1-206ENST00000526325 756 ntTSL 5 BASIC15.96■□□□□ 0.15
COL28A1Q2UY09 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC15.96■□□□□ 0.15
COL28A1Q2UY09 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
COL28A1Q2UY09 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC15.96■□□□□ 0.15
COL28A1Q2UY09 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC15.96■□□□□ 0.15
COL28A1Q2UY09 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
COL28A1Q2UY09 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
COL28A1Q2UY09 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
COL28A1Q2UY09 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
COL28A1Q2UY09 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC15.96■□□□□ 0.15
COL28A1Q2UY09 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC15.96■□□□□ 0.15
COL28A1Q2UY09 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.15
COL28A1Q2UY09 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
COL28A1Q2UY09 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
COL28A1Q2UY09 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC15.96■□□□□ 0.15
COL28A1Q2UY09 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
COL28A1Q2UY09 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.14
COL28A1Q2UY09 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC15.96■□□□□ 0.14
COL28A1Q2UY09 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC15.96■□□□□ 0.14
COL28A1Q2UY09 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC15.96■□□□□ 0.14
COL28A1Q2UY09 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
COL28A1Q2UY09 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
COL28A1Q2UY09 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
COL28A1Q2UY09 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
COL28A1Q2UY09 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
COL28A1Q2UY09 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
COL28A1Q2UY09 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
COL28A1Q2UY09 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC15.95■□□□□ 0.14
COL28A1Q2UY09 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
COL28A1Q2UY09 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
COL28A1Q2UY09 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC15.95■□□□□ 0.14
COL28A1Q2UY09 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
COL28A1Q2UY09 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
COL28A1Q2UY09 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
COL28A1Q2UY09 MXI1-205ENST00000393134 889 ntTSL 2 BASIC15.95■□□□□ 0.14
COL28A1Q2UY09 AC112492.5-201ENST00000421897 457 ntBASIC15.95■□□□□ 0.14
COL28A1Q2UY09 TMPRSS11CP-201ENST00000453277 683 ntBASIC15.95■□□□□ 0.14
COL28A1Q2UY09 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC15.95■□□□□ 0.14
COL28A1Q2UY09 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC15.95■□□□□ 0.14
COL28A1Q2UY09 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC15.95■□□□□ 0.14
COL28A1Q2UY09 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
COL28A1Q2UY09 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC15.95■□□□□ 0.14
COL28A1Q2UY09 KRT8P23-201ENST00000560090 1207 ntBASIC15.95■□□□□ 0.14
COL28A1Q2UY09 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC15.95■□□□□ 0.14
COL28A1Q2UY09 AC073592.8-201ENST00000624126 511 ntBASIC15.95■□□□□ 0.14
COL28A1Q2UY09 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC15.95■□□□□ 0.14
COL28A1Q2UY09 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
COL28A1Q2UY09 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
COL28A1Q2UY09 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC15.95■□□□□ 0.14
COL28A1Q2UY09 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
COL28A1Q2UY09 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
COL28A1Q2UY09 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
COL28A1Q2UY09 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
COL28A1Q2UY09 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC15.95■□□□□ 0.14
COL28A1Q2UY09 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
COL28A1Q2UY09 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
COL28A1Q2UY09 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC15.95■□□□□ 0.14
COL28A1Q2UY09 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
COL28A1Q2UY09 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
COL28A1Q2UY09 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC15.95■□□□□ 0.14
COL28A1Q2UY09 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
COL28A1Q2UY09 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
COL28A1Q2UY09 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
COL28A1Q2UY09 AC008894.3-201ENST00000624324 3103 ntBASIC15.94■□□□□ 0.14
COL28A1Q2UY09 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC15.94■□□□□ 0.14
COL28A1Q2UY09 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC15.94■□□□□ 0.14
COL28A1Q2UY09 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC15.94■□□□□ 0.14
COL28A1Q2UY09 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
COL28A1Q2UY09 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC15.94■□□□□ 0.14
COL28A1Q2UY09 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC15.94■□□□□ 0.14
COL28A1Q2UY09 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
COL28A1Q2UY09 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms