Protein–RNA interactions for Protein: Q2NKJ3

CTC1, CST complex subunit CTC1, humanhuman

Predictions only

Length 1,217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTC1Q2NKJ3 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CTC1Q2NKJ3 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
CTC1Q2NKJ3 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CTC1Q2NKJ3 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
CTC1Q2NKJ3 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
CTC1Q2NKJ3 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
CTC1Q2NKJ3 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
CTC1Q2NKJ3 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
CTC1Q2NKJ3 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CTC1Q2NKJ3 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
CTC1Q2NKJ3 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC17.69■□□□□ 0.42
CTC1Q2NKJ3 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CTC1Q2NKJ3 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CTC1Q2NKJ3 AC016027.1-202ENST00000607927 1699 ntBASIC17.69■□□□□ 0.42
CTC1Q2NKJ3 AC098614.1-201ENST00000368528 745 ntBASIC17.69■□□□□ 0.42
CTC1Q2NKJ3 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC17.69■□□□□ 0.42
CTC1Q2NKJ3 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CTC1Q2NKJ3 SATB1-217ENST00000493952 626 ntTSL 3 BASIC17.69■□□□□ 0.42
CTC1Q2NKJ3 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CTC1Q2NKJ3 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC17.69■□□□□ 0.42
CTC1Q2NKJ3 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC17.69■□□□□ 0.42
CTC1Q2NKJ3 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC17.69■□□□□ 0.42
CTC1Q2NKJ3 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC17.69■□□□□ 0.42
CTC1Q2NKJ3 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
CTC1Q2NKJ3 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CTC1Q2NKJ3 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CTC1Q2NKJ3 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CTC1Q2NKJ3 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC17.69■□□□□ 0.42
CTC1Q2NKJ3 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
CTC1Q2NKJ3 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC17.68■□□□□ 0.42
CTC1Q2NKJ3 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC17.68■□□□□ 0.42
CTC1Q2NKJ3 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC17.68■□□□□ 0.42
CTC1Q2NKJ3 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CTC1Q2NKJ3 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CTC1Q2NKJ3 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CTC1Q2NKJ3 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CTC1Q2NKJ3 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC17.68■□□□□ 0.42
CTC1Q2NKJ3 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC17.68■□□□□ 0.42
CTC1Q2NKJ3 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CTC1Q2NKJ3 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC17.68■□□□□ 0.42
CTC1Q2NKJ3 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC17.68■□□□□ 0.42
CTC1Q2NKJ3 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CTC1Q2NKJ3 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CTC1Q2NKJ3 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CTC1Q2NKJ3 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CTC1Q2NKJ3 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CTC1Q2NKJ3 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
CTC1Q2NKJ3 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CTC1Q2NKJ3 GIMAP3P-201ENST00000495150 836 ntBASIC17.68■□□□□ 0.42
CTC1Q2NKJ3 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC17.68■□□□□ 0.42
CTC1Q2NKJ3 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CTC1Q2NKJ3 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC17.68■□□□□ 0.42
CTC1Q2NKJ3 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC17.68■□□□□ 0.42
CTC1Q2NKJ3 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC17.68■□□□□ 0.42
CTC1Q2NKJ3 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC17.68■□□□□ 0.42
CTC1Q2NKJ3 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC17.68■□□□□ 0.42
CTC1Q2NKJ3 AP3S2-216ENST00000617003 1561 ntBASIC17.68■□□□□ 0.42
CTC1Q2NKJ3 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
CTC1Q2NKJ3 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CTC1Q2NKJ3 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
CTC1Q2NKJ3 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC17.68■□□□□ 0.42
CTC1Q2NKJ3 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC17.68■□□□□ 0.42
CTC1Q2NKJ3 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
CTC1Q2NKJ3 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CTC1Q2NKJ3 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CTC1Q2NKJ3 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC17.68■□□□□ 0.42
CTC1Q2NKJ3 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
CTC1Q2NKJ3 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
CTC1Q2NKJ3 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CTC1Q2NKJ3 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
CTC1Q2NKJ3 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC17.68■□□□□ 0.42
CTC1Q2NKJ3 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
CTC1Q2NKJ3 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CTC1Q2NKJ3 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC17.68■□□□□ 0.42
CTC1Q2NKJ3 AC133963.1-201ENST00000504166 1679 ntBASIC17.67■□□□□ 0.42
CTC1Q2NKJ3 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
CTC1Q2NKJ3 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
CTC1Q2NKJ3 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC17.67■□□□□ 0.42
CTC1Q2NKJ3 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC17.67■□□□□ 0.42
CTC1Q2NKJ3 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
CTC1Q2NKJ3 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
CTC1Q2NKJ3 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CTC1Q2NKJ3 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
CTC1Q2NKJ3 AL162727.3-201ENST00000635661 2787 ntBASIC17.67■□□□□ 0.42
CTC1Q2NKJ3 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CTC1Q2NKJ3 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
CTC1Q2NKJ3 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC17.67■□□□□ 0.42
CTC1Q2NKJ3 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC17.67■□□□□ 0.42
CTC1Q2NKJ3 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CTC1Q2NKJ3 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC17.67■□□□□ 0.42
CTC1Q2NKJ3 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC17.67■□□□□ 0.42
CTC1Q2NKJ3 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC17.67■□□□□ 0.42
CTC1Q2NKJ3 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC17.67■□□□□ 0.42
CTC1Q2NKJ3 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CTC1Q2NKJ3 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC17.67■□□□□ 0.42
CTC1Q2NKJ3 AC008738.7-201ENST00000609744 511 ntBASIC17.67■□□□□ 0.42
CTC1Q2NKJ3 WT1-AS_2.1-201ENST00000613208 137 ntBASIC17.67■□□□□ 0.42
CTC1Q2NKJ3 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CTC1Q2NKJ3 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CTC1Q2NKJ3 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms