Protein–RNA interactions for Protein: P78396

CCNA1, Cyclin-A1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNA1P78396 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCNA1P78396 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CCNA1P78396 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
CCNA1P78396 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCNA1P78396 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC18.73■□□□□ 0.59
CCNA1P78396 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCNA1P78396 AC092068.3-201ENST00000587894 2016 ntBASIC18.73■□□□□ 0.59
CCNA1P78396 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCNA1P78396 PCDHB17P-201ENST00000539533 2393 ntBASIC18.73■□□□□ 0.59
CCNA1P78396 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC18.73■□□□□ 0.59
CCNA1P78396 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC18.73■□□□□ 0.59
CCNA1P78396 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC18.73■□□□□ 0.59
CCNA1P78396 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
CCNA1P78396 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CCNA1P78396 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC18.73■□□□□ 0.59
CCNA1P78396 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC18.73■□□□□ 0.59
CCNA1P78396 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC18.73■□□□□ 0.59
CCNA1P78396 CHCHD2P3-201ENST00000603038 451 ntBASIC18.73■□□□□ 0.59
CCNA1P78396 AC017083.2-201ENST00000608069 979 ntBASIC18.73■□□□□ 0.59
CCNA1P78396 AL162274.1-201ENST00000617191 1098 ntBASIC18.73■□□□□ 0.59
CCNA1P78396 MIR6069-201ENST00000620069 79 ntBASIC18.73■□□□□ 0.59
CCNA1P78396 AC007431.3-201ENST00000623221 587 ntBASIC18.73■□□□□ 0.59
CCNA1P78396 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCNA1P78396 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CCNA1P78396 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CCNA1P78396 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
CCNA1P78396 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC18.73■□□□□ 0.59
CCNA1P78396 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC18.73■□□□□ 0.59
CCNA1P78396 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC18.73■□□□□ 0.59
CCNA1P78396 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCNA1P78396 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCNA1P78396 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCNA1P78396 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCNA1P78396 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCNA1P78396 AC067852.2-201ENST00000590513 2313 ntBASIC18.72■□□□□ 0.59
CCNA1P78396 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CCNA1P78396 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
CCNA1P78396 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
CCNA1P78396 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC18.72■□□□□ 0.59
CCNA1P78396 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCNA1P78396 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCNA1P78396 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
CCNA1P78396 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCNA1P78396 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCNA1P78396 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCNA1P78396 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC18.72■□□□□ 0.59
CCNA1P78396 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CCNA1P78396 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC18.72■□□□□ 0.59
CCNA1P78396 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC18.72■□□□□ 0.59
CCNA1P78396 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCNA1P78396 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCNA1P78396 HILS1-202ENST00000545329 423 ntBASIC18.72■□□□□ 0.59
CCNA1P78396 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
CCNA1P78396 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC18.72■□□□□ 0.59
CCNA1P78396 IMPDH1P4-201ENST00000445028 1534 ntBASIC18.72■□□□□ 0.59
CCNA1P78396 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC18.72■□□□□ 0.59
CCNA1P78396 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
CCNA1P78396 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCNA1P78396 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCNA1P78396 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC18.72■□□□□ 0.59
CCNA1P78396 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCNA1P78396 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
CCNA1P78396 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCNA1P78396 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCNA1P78396 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC18.71■□□□□ 0.59
CCNA1P78396 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CCNA1P78396 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCNA1P78396 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCNA1P78396 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC18.71■□□□□ 0.59
CCNA1P78396 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCNA1P78396 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCNA1P78396 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC18.71■□□□□ 0.59
CCNA1P78396 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC18.71■□□□□ 0.59
CCNA1P78396 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC18.71■□□□□ 0.59
CCNA1P78396 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC18.71■□□□□ 0.59
CCNA1P78396 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCNA1P78396 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCNA1P78396 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC18.71■□□□□ 0.59
CCNA1P78396 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC18.71■□□□□ 0.59
CCNA1P78396 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC18.71■□□□□ 0.59
CCNA1P78396 SRD5A3P1-201ENST00000603021 949 ntBASIC18.71■□□□□ 0.59
CCNA1P78396 5S_rRNA.22-201ENST00000614916 106 ntBASIC18.71■□□□□ 0.59
CCNA1P78396 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC18.71■□□□□ 0.59
CCNA1P78396 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
CCNA1P78396 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
CCNA1P78396 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCNA1P78396 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCNA1P78396 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCNA1P78396 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC18.71■□□□□ 0.59
CCNA1P78396 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCNA1P78396 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCNA1P78396 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC18.71■□□□□ 0.59
CCNA1P78396 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CCNA1P78396 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCNA1P78396 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC18.71■□□□□ 0.59
CCNA1P78396 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC18.71■□□□□ 0.58
CCNA1P78396 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CCNA1P78396 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC18.7■□□□□ 0.58
CCNA1P78396 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
CCNA1P78396 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms