Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC14.24□□□□□ -0.13
ABCA4P78363 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
ABCA4P78363 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC14.24□□□□□ -0.13
ABCA4P78363 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC14.24□□□□□ -0.13
ABCA4P78363 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
ABCA4P78363 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
ABCA4P78363 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
ABCA4P78363 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC14.24□□□□□ -0.13
ABCA4P78363 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC14.24□□□□□ -0.13
ABCA4P78363 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
ABCA4P78363 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
ABCA4P78363 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
ABCA4P78363 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
ABCA4P78363 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC14.24□□□□□ -0.13
ABCA4P78363 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC14.24□□□□□ -0.13
ABCA4P78363 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC14.24□□□□□ -0.13
ABCA4P78363 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC14.24□□□□□ -0.13
ABCA4P78363 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC14.24□□□□□ -0.13
ABCA4P78363 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC14.24□□□□□ -0.13
ABCA4P78363 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
ABCA4P78363 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
ABCA4P78363 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
ABCA4P78363 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
ABCA4P78363 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
ABCA4P78363 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
ABCA4P78363 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
ABCA4P78363 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
ABCA4P78363 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
ABCA4P78363 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC14.24□□□□□ -0.13
ABCA4P78363 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC14.24□□□□□ -0.13
ABCA4P78363 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
ABCA4P78363 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC14.24□□□□□ -0.13
ABCA4P78363 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
ABCA4P78363 GRAMD4P3-201ENST00000621665 1669 ntBASIC14.24□□□□□ -0.13
ABCA4P78363 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
ABCA4P78363 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
ABCA4P78363 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC14.24□□□□□ -0.13
ABCA4P78363 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC14.24□□□□□ -0.13
ABCA4P78363 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC14.24□□□□□ -0.13
ABCA4P78363 AC004233.3-201ENST00000607794 1269 ntBASIC14.24□□□□□ -0.13
ABCA4P78363 SPDYE12P-201ENST00000618416 771 ntBASIC14.24□□□□□ -0.13
ABCA4P78363 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
ABCA4P78363 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
ABCA4P78363 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
ABCA4P78363 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
ABCA4P78363 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
ABCA4P78363 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
ABCA4P78363 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
ABCA4P78363 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
ABCA4P78363 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
ABCA4P78363 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
ABCA4P78363 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
ABCA4P78363 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC14.23□□□□□ -0.13
ABCA4P78363 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
ABCA4P78363 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
ABCA4P78363 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
ABCA4P78363 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
ABCA4P78363 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
ABCA4P78363 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC14.23□□□□□ -0.13
ABCA4P78363 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC14.23□□□□□ -0.13
ABCA4P78363 TMPRSS11CP-201ENST00000453277 683 ntBASIC14.23□□□□□ -0.13
ABCA4P78363 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC14.23□□□□□ -0.13
ABCA4P78363 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
ABCA4P78363 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC14.23□□□□□ -0.13
ABCA4P78363 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC14.23□□□□□ -0.13
ABCA4P78363 AC008738.7-201ENST00000609744 511 ntBASIC14.23□□□□□ -0.13
ABCA4P78363 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC14.23□□□□□ -0.13
ABCA4P78363 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC14.23□□□□□ -0.13
ABCA4P78363 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC14.23□□□□□ -0.13
ABCA4P78363 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
ABCA4P78363 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
ABCA4P78363 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC14.23□□□□□ -0.13
ABCA4P78363 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC14.23□□□□□ -0.13
ABCA4P78363 RABEPK-201ENST00000259460 1313 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
ABCA4P78363 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
ABCA4P78363 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
ABCA4P78363 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
ABCA4P78363 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC14.23□□□□□ -0.13
ABCA4P78363 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
ABCA4P78363 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
ABCA4P78363 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC14.23□□□□□ -0.13
ABCA4P78363 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
ABCA4P78363 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
ABCA4P78363 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
ABCA4P78363 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC14.22□□□□□ -0.13
ABCA4P78363 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
ABCA4P78363 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC14.22□□□□□ -0.13
ABCA4P78363 HNRNPA3P1-201ENST00000401429 1139 ntBASIC14.22□□□□□ -0.13
ABCA4P78363 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC14.22□□□□□ -0.13
ABCA4P78363 HNRNPA3P5-201ENST00000455201 833 ntBASIC14.22□□□□□ -0.13
ABCA4P78363 GIMAP3P-201ENST00000495150 836 ntBASIC14.22□□□□□ -0.13
ABCA4P78363 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC14.22□□□□□ -0.13
ABCA4P78363 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
ABCA4P78363 AP001350.2-201ENST00000625104 1094 ntBASIC14.22□□□□□ -0.13
ABCA4P78363 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
ABCA4P78363 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC14.22□□□□□ -0.13
ABCA4P78363 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
ABCA4P78363 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
ABCA4P78363 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
ABCA4P78363 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC14.22□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms