Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
RNF4P78317 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC15.36■□□□□ 0.05
RNF4P78317 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
RNF4P78317 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
RNF4P78317 GCK-202ENST00000345378 2421 ntTSL 2 BASIC15.36■□□□□ 0.05
RNF4P78317 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
RNF4P78317 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
RNF4P78317 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
RNF4P78317 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC15.36■□□□□ 0.05
RNF4P78317 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
RNF4P78317 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
RNF4P78317 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
RNF4P78317 HLA-A-202ENST00000376806 1854 ntBASIC15.36■□□□□ 0.05
RNF4P78317 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
RNF4P78317 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
RNF4P78317 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC15.36■□□□□ 0.05
RNF4P78317 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
RNF4P78317 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
RNF4P78317 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
RNF4P78317 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC15.36■□□□□ 0.05
RNF4P78317 AL592309.1-201ENST00000443127 649 ntBASIC15.36■□□□□ 0.05
RNF4P78317 URGCP-206ENST00000446958 365 ntTSL 2 BASIC15.36■□□□□ 0.05
RNF4P78317 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC15.36■□□□□ 0.05
RNF4P78317 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC15.36■□□□□ 0.05
RNF4P78317 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC15.36■□□□□ 0.05
RNF4P78317 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC15.36■□□□□ 0.05
RNF4P78317 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC15.36■□□□□ 0.05
RNF4P78317 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC15.36■□□□□ 0.05
RNF4P78317 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC15.36■□□□□ 0.05
RNF4P78317 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC15.36■□□□□ 0.05
RNF4P78317 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC15.36■□□□□ 0.05
RNF4P78317 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC15.36■□□□□ 0.05
RNF4P78317 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC15.36■□□□□ 0.05
RNF4P78317 METTL23-205ENST00000588302 925 ntTSL 5 BASIC15.36■□□□□ 0.05
RNF4P78317 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
RNF4P78317 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC15.36■□□□□ 0.05
RNF4P78317 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
RNF4P78317 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC15.36■□□□□ 0.05
RNF4P78317 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
RNF4P78317 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
RNF4P78317 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC15.36■□□□□ 0.05
RNF4P78317 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC15.36■□□□□ 0.05
RNF4P78317 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC15.36■□□□□ 0.05
RNF4P78317 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
RNF4P78317 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
RNF4P78317 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
RNF4P78317 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC15.35■□□□□ 0.05
RNF4P78317 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
RNF4P78317 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
RNF4P78317 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
RNF4P78317 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC15.35■□□□□ 0.05
RNF4P78317 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
RNF4P78317 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC15.35■□□□□ 0.05
RNF4P78317 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
RNF4P78317 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
RNF4P78317 GPAA1P2-202ENST00000606848 1787 ntBASIC15.35■□□□□ 0.05
RNF4P78317 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
RNF4P78317 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
RNF4P78317 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC15.35■□□□□ 0.05
RNF4P78317 SPCS2P4-201ENST00000436160 681 ntBASIC15.35■□□□□ 0.05
RNF4P78317 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC15.35■□□□□ 0.05
RNF4P78317 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC15.35■□□□□ 0.05
RNF4P78317 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC15.35■□□□□ 0.05
RNF4P78317 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
RNF4P78317 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC15.35■□□□□ 0.05
RNF4P78317 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC15.35■□□□□ 0.05
RNF4P78317 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC15.35■□□□□ 0.05
RNF4P78317 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
RNF4P78317 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC15.35■□□□□ 0.05
RNF4P78317 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC15.35■□□□□ 0.05
RNF4P78317 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC15.35■□□□□ 0.05
RNF4P78317 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC15.35■□□□□ 0.05
RNF4P78317 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
RNF4P78317 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC15.35■□□□□ 0.05
RNF4P78317 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
RNF4P78317 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
RNF4P78317 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
RNF4P78317 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
RNF4P78317 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
RNF4P78317 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
RNF4P78317 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
RNF4P78317 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC15.35■□□□□ 0.05
RNF4P78317 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
RNF4P78317 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC15.35■□□□□ 0.05
RNF4P78317 AC099398.1-201ENST00000567919 2776 ntBASIC15.35■□□□□ 0.05
RNF4P78317 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
RNF4P78317 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
RNF4P78317 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC15.35■□□□□ 0.05
RNF4P78317 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
RNF4P78317 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
RNF4P78317 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
RNF4P78317 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
RNF4P78317 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC15.34■□□□□ 0.05
RNF4P78317 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC15.34■□□□□ 0.05
RNF4P78317 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
RNF4P78317 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
RNF4P78317 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
RNF4P78317 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC15.34■□□□□ 0.05
RNF4P78317 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
RNF4P78317 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms