Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC17.35■□□□□ 0.37
HDAC4P56524 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
HDAC4P56524 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HDAC4P56524 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HDAC4P56524 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
HDAC4P56524 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HDAC4P56524 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HDAC4P56524 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC17.35■□□□□ 0.37
HDAC4P56524 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
HDAC4P56524 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
HDAC4P56524 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
HDAC4P56524 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC17.35■□□□□ 0.37
HDAC4P56524 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC17.35■□□□□ 0.37
HDAC4P56524 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HDAC4P56524 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
HDAC4P56524 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
HDAC4P56524 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
HDAC4P56524 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
HDAC4P56524 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
HDAC4P56524 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC17.34■□□□□ 0.37
HDAC4P56524 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
HDAC4P56524 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
HDAC4P56524 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC17.34■□□□□ 0.37
HDAC4P56524 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HDAC4P56524 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC17.34■□□□□ 0.37
HDAC4P56524 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HDAC4P56524 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HDAC4P56524 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
HDAC4P56524 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC17.34■□□□□ 0.37
HDAC4P56524 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HDAC4P56524 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HDAC4P56524 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC17.34■□□□□ 0.37
HDAC4P56524 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC17.34■□□□□ 0.37
HDAC4P56524 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC17.34■□□□□ 0.37
HDAC4P56524 WT1-209ENST00000530998 2421 ntTSL 2 BASIC17.34■□□□□ 0.37
HDAC4P56524 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
HDAC4P56524 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC17.34■□□□□ 0.37
HDAC4P56524 THTPA-204ENST00000554970 569 ntTSL 4 BASIC17.34■□□□□ 0.37
HDAC4P56524 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
HDAC4P56524 THTPA-206ENST00000556015 535 ntTSL 3 BASIC17.34■□□□□ 0.37
HDAC4P56524 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC17.34■□□□□ 0.37
HDAC4P56524 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
HDAC4P56524 PDPK2P-202ENST00000562415 1191 ntBASIC17.34■□□□□ 0.37
HDAC4P56524 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
HDAC4P56524 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC17.34■□□□□ 0.37
HDAC4P56524 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC17.34■□□□□ 0.37
HDAC4P56524 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
HDAC4P56524 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
HDAC4P56524 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
HDAC4P56524 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
HDAC4P56524 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
HDAC4P56524 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
HDAC4P56524 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC17.33■□□□□ 0.37
HDAC4P56524 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
HDAC4P56524 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC17.33■□□□□ 0.37
HDAC4P56524 AC092919.2-201ENST00000623631 1645 ntBASIC17.33■□□□□ 0.37
HDAC4P56524 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
HDAC4P56524 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
HDAC4P56524 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
HDAC4P56524 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
HDAC4P56524 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
HDAC4P56524 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
HDAC4P56524 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC17.33■□□□□ 0.36
HDAC4P56524 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC17.33■□□□□ 0.36
HDAC4P56524 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC17.33■□□□□ 0.36
HDAC4P56524 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC17.33■□□□□ 0.36
HDAC4P56524 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC17.33■□□□□ 0.36
HDAC4P56524 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC17.33■□□□□ 0.36
HDAC4P56524 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC17.33■□□□□ 0.36
HDAC4P56524 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
HDAC4P56524 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC17.33■□□□□ 0.36
HDAC4P56524 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
HDAC4P56524 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
HDAC4P56524 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
HDAC4P56524 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC17.33■□□□□ 0.36
HDAC4P56524 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
HDAC4P56524 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
HDAC4P56524 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC17.33■□□□□ 0.36
HDAC4P56524 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
HDAC4P56524 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC17.33■□□□□ 0.36
HDAC4P56524 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC17.33■□□□□ 0.36
HDAC4P56524 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
HDAC4P56524 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HDAC4P56524 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
HDAC4P56524 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
HDAC4P56524 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
HDAC4P56524 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
HDAC4P56524 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
HDAC4P56524 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC17.32■□□□□ 0.36
HDAC4P56524 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC17.32■□□□□ 0.36
HDAC4P56524 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC17.32■□□□□ 0.36
HDAC4P56524 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC17.32■□□□□ 0.36
HDAC4P56524 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
HDAC4P56524 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC17.32■□□□□ 0.36
HDAC4P56524 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
HDAC4P56524 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
HDAC4P56524 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC17.32■□□□□ 0.36
HDAC4P56524 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
HDAC4P56524 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HDAC4P56524 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC17.32■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 51.9 ms