Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
NEK3P51956 AC025580.3-201ENST00000617932 1424 ntBASIC17.13■□□□□ 0.33
NEK3P51956 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
NEK3P51956 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
NEK3P51956 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
NEK3P51956 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
NEK3P51956 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
NEK3P51956 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
NEK3P51956 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC17.13■□□□□ 0.33
NEK3P51956 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
NEK3P51956 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
NEK3P51956 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC17.13■□□□□ 0.33
NEK3P51956 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC17.13■□□□□ 0.33
NEK3P51956 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
NEK3P51956 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
NEK3P51956 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC17.13■□□□□ 0.33
NEK3P51956 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
NEK3P51956 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC17.13■□□□□ 0.33
NEK3P51956 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC17.13■□□□□ 0.33
NEK3P51956 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC17.13■□□□□ 0.33
NEK3P51956 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
NEK3P51956 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC17.13■□□□□ 0.33
NEK3P51956 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC17.13■□□□□ 0.33
NEK3P51956 AL691403.2-201ENST00000618460 490 ntBASIC17.13■□□□□ 0.33
NEK3P51956 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
NEK3P51956 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
NEK3P51956 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC17.13■□□□□ 0.33
NEK3P51956 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
NEK3P51956 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
NEK3P51956 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
NEK3P51956 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
NEK3P51956 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
NEK3P51956 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC17.13■□□□□ 0.33
NEK3P51956 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
NEK3P51956 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
NEK3P51956 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC17.13■□□□□ 0.33
NEK3P51956 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
NEK3P51956 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
NEK3P51956 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
NEK3P51956 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
NEK3P51956 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC17.12■□□□□ 0.33
NEK3P51956 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
NEK3P51956 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
NEK3P51956 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
NEK3P51956 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
NEK3P51956 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC17.12■□□□□ 0.33
NEK3P51956 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC17.12■□□□□ 0.33
NEK3P51956 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC17.12■□□□□ 0.33
NEK3P51956 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC17.12■□□□□ 0.33
NEK3P51956 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
NEK3P51956 AC079328.2-201ENST00000561241 3354 ntBASIC17.12■□□□□ 0.33
NEK3P51956 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
NEK3P51956 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC17.12■□□□□ 0.33
NEK3P51956 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC17.12■□□□□ 0.33
NEK3P51956 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
NEK3P51956 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
NEK3P51956 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC17.12■□□□□ 0.33
NEK3P51956 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
NEK3P51956 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
NEK3P51956 AL513480.1-201ENST00000451731 511 ntBASIC17.12■□□□□ 0.33
NEK3P51956 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC17.12■□□□□ 0.33
NEK3P51956 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC17.12■□□□□ 0.33
NEK3P51956 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC17.12■□□□□ 0.33
NEK3P51956 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC17.12■□□□□ 0.33
NEK3P51956 AC005829.1-201ENST00000570002 483 ntBASIC17.12■□□□□ 0.33
NEK3P51956 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC17.12■□□□□ 0.33
NEK3P51956 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC17.12■□□□□ 0.33
NEK3P51956 ACTL9-202ENST00000612068 1252 ntBASIC17.12■□□□□ 0.33
NEK3P51956 AC055717.3-201ENST00000622967 595 ntBASIC17.12■□□□□ 0.33
NEK3P51956 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC17.12■□□□□ 0.33
NEK3P51956 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
NEK3P51956 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
NEK3P51956 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
NEK3P51956 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
NEK3P51956 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC17.12■□□□□ 0.33
NEK3P51956 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
NEK3P51956 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
NEK3P51956 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
NEK3P51956 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC17.12■□□□□ 0.33
NEK3P51956 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
NEK3P51956 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
NEK3P51956 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
NEK3P51956 AC092364.2-201ENST00000596710 2692 ntBASIC17.12■□□□□ 0.33
NEK3P51956 CYP51A1P2-201ENST00000419457 1499 ntBASIC17.12■□□□□ 0.33
NEK3P51956 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
NEK3P51956 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
NEK3P51956 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC17.11■□□□□ 0.33
NEK3P51956 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
NEK3P51956 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
NEK3P51956 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
NEK3P51956 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
NEK3P51956 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
NEK3P51956 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
NEK3P51956 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC17.11■□□□□ 0.33
NEK3P51956 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
NEK3P51956 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
NEK3P51956 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC17.11■□□□□ 0.33
NEK3P51956 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
NEK3P51956 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC17.11■□□□□ 0.33
NEK3P51956 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC17.11■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 47.6 ms