Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CXCL12P48061 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
CXCL12P48061 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC16.35■□□□□ 0.21
CXCL12P48061 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
CXCL12P48061 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
CXCL12P48061 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
CXCL12P48061 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CXCL12P48061 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
CXCL12P48061 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
CXCL12P48061 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
CXCL12P48061 DEK-201ENST00000244776 1441 ntTSL 2 BASIC16.35■□□□□ 0.21
CXCL12P48061 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CXCL12P48061 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC16.35■□□□□ 0.21
CXCL12P48061 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
CXCL12P48061 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CXCL12P48061 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
CXCL12P48061 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC16.35■□□□□ 0.21
CXCL12P48061 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC16.35■□□□□ 0.21
CXCL12P48061 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CXCL12P48061 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CXCL12P48061 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC16.34■□□□□ 0.21
CXCL12P48061 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
CXCL12P48061 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC16.34■□□□□ 0.21
CXCL12P48061 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CXCL12P48061 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CXCL12P48061 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC16.34■□□□□ 0.21
CXCL12P48061 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC16.34■□□□□ 0.21
CXCL12P48061 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CXCL12P48061 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC16.34■□□□□ 0.21
CXCL12P48061 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CXCL12P48061 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC16.34■□□□□ 0.21
CXCL12P48061 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC16.34■□□□□ 0.21
CXCL12P48061 ACTBP11-201ENST00000436287 1126 ntBASIC16.34■□□□□ 0.21
CXCL12P48061 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC16.34■□□□□ 0.21
CXCL12P48061 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC16.34■□□□□ 0.21
CXCL12P48061 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CXCL12P48061 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC16.34■□□□□ 0.21
CXCL12P48061 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC16.34■□□□□ 0.21
CXCL12P48061 RARRES2P5-201ENST00000564013 466 ntBASIC16.34■□□□□ 0.21
CXCL12P48061 RN7SL219P-201ENST00000582872 296 ntBASIC16.34■□□□□ 0.21
CXCL12P48061 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC16.34■□□□□ 0.21
CXCL12P48061 AC010319.3-201ENST00000597028 470 ntBASIC16.34■□□□□ 0.21
CXCL12P48061 AC074044.1-201ENST00000609673 707 ntBASIC16.34■□□□□ 0.21
CXCL12P48061 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
CXCL12P48061 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC16.34■□□□□ 0.21
CXCL12P48061 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CXCL12P48061 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CXCL12P48061 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC16.34■□□□□ 0.21
CXCL12P48061 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC16.34■□□□□ 0.21
CXCL12P48061 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CXCL12P48061 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CXCL12P48061 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CXCL12P48061 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CXCL12P48061 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
CXCL12P48061 CDC14C-201ENST00000428251 1719 ntBASIC16.33■□□□□ 0.21
CXCL12P48061 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC16.33■□□□□ 0.21
CXCL12P48061 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC16.33■□□□□ 0.21
CXCL12P48061 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
CXCL12P48061 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
CXCL12P48061 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
CXCL12P48061 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
CXCL12P48061 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
CXCL12P48061 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.21
CXCL12P48061 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.21
CXCL12P48061 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CXCL12P48061 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CXCL12P48061 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CXCL12P48061 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CXCL12P48061 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CXCL12P48061 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CXCL12P48061 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CXCL12P48061 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
CXCL12P48061 RAD18-204ENST00000418463 563 ntTSL 4 BASIC16.33■□□□□ 0.2
CXCL12P48061 RAD18-205ENST00000421052 582 ntTSL 3 BASIC16.33■□□□□ 0.2
CXCL12P48061 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CXCL12P48061 RHOA-206ENST00000454011 889 ntTSL 2 BASIC16.33■□□□□ 0.2
CXCL12P48061 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC16.33■□□□□ 0.2
CXCL12P48061 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
CXCL12P48061 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC16.33■□□□□ 0.2
CXCL12P48061 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC16.33■□□□□ 0.2
CXCL12P48061 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
CXCL12P48061 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CXCL12P48061 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC16.33■□□□□ 0.2
CXCL12P48061 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC16.33■□□□□ 0.2
CXCL12P48061 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC16.33■□□□□ 0.2
CXCL12P48061 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
CXCL12P48061 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
CXCL12P48061 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CXCL12P48061 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CXCL12P48061 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CXCL12P48061 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CXCL12P48061 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CXCL12P48061 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CXCL12P48061 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
CXCL12P48061 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC16.33■□□□□ 0.2
CXCL12P48061 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CXCL12P48061 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC16.33■□□□□ 0.2
CXCL12P48061 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
CXCL12P48061 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
CXCL12P48061 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 58.2 ms