Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
CIITAP33076 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC18.62■□□□□ 0.57
CIITAP33076 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
CIITAP33076 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC18.62■□□□□ 0.57
CIITAP33076 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CIITAP33076 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
CIITAP33076 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
CIITAP33076 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CIITAP33076 GOLGA2P9-201ENST00000596977 1937 ntBASIC18.62■□□□□ 0.57
CIITAP33076 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CIITAP33076 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
CIITAP33076 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CIITAP33076 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CIITAP33076 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
CIITAP33076 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC18.62■□□□□ 0.57
CIITAP33076 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
CIITAP33076 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
CIITAP33076 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CIITAP33076 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
CIITAP33076 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CIITAP33076 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC18.61■□□□□ 0.57
CIITAP33076 AC009053.2-201ENST00000563701 2365 ntBASIC18.61■□□□□ 0.57
CIITAP33076 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC18.61■□□□□ 0.57
CIITAP33076 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CIITAP33076 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CIITAP33076 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
CIITAP33076 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC18.61■□□□□ 0.57
CIITAP33076 AL589702.1-201ENST00000641229 1509 ntBASIC18.61■□□□□ 0.57
CIITAP33076 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CIITAP33076 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CIITAP33076 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
CIITAP33076 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
CIITAP33076 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC18.61■□□□□ 0.57
CIITAP33076 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CIITAP33076 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CIITAP33076 FAM220BP-201ENST00000377689 816 ntBASIC18.61■□□□□ 0.57
CIITAP33076 PP14571-201ENST00000404327 934 ntTSL 2 BASIC18.61■□□□□ 0.57
CIITAP33076 RBPMS2P1-201ENST00000437762 623 ntBASIC18.61■□□□□ 0.57
CIITAP33076 METTL21AP1-201ENST00000438852 635 ntBASIC18.61■□□□□ 0.57
CIITAP33076 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC18.61■□□□□ 0.57
CIITAP33076 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC18.61■□□□□ 0.57
CIITAP33076 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CIITAP33076 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC18.61■□□□□ 0.57
CIITAP33076 ALG1L8P-201ENST00000533887 760 ntBASIC18.61■□□□□ 0.57
CIITAP33076 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC18.61■□□□□ 0.57
CIITAP33076 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
CIITAP33076 AC026150.2-201ENST00000564693 1156 ntBASIC18.61■□□□□ 0.57
CIITAP33076 AC015911.4-201ENST00000588022 1070 ntBASIC18.61■□□□□ 0.57
CIITAP33076 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC18.61■□□□□ 0.57
CIITAP33076 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CIITAP33076 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
CIITAP33076 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CIITAP33076 RELA-227ENST00000615805 2236 ntTSL 5 BASIC18.61■□□□□ 0.57
CIITAP33076 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CIITAP33076 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC18.61■□□□□ 0.57
CIITAP33076 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
CIITAP33076 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC18.6■□□□□ 0.57
CIITAP33076 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC18.6■□□□□ 0.57
CIITAP33076 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC18.6■□□□□ 0.57
CIITAP33076 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
CIITAP33076 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CIITAP33076 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC18.6■□□□□ 0.57
CIITAP33076 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
CIITAP33076 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
CIITAP33076 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
CIITAP33076 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CIITAP33076 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CIITAP33076 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CIITAP33076 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CIITAP33076 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC18.6■□□□□ 0.57
CIITAP33076 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CIITAP33076 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CIITAP33076 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC18.6■□□□□ 0.57
CIITAP33076 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC18.6■□□□□ 0.57
CIITAP33076 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
CIITAP33076 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CIITAP33076 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
CIITAP33076 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CIITAP33076 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CIITAP33076 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CIITAP33076 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CIITAP33076 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
CIITAP33076 AC005622.1-201ENST00000636801 1703 ntBASIC18.6■□□□□ 0.57
CIITAP33076 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CIITAP33076 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
CIITAP33076 AP3S2-216ENST00000617003 1561 ntBASIC18.59■□□□□ 0.57
CIITAP33076 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CIITAP33076 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CIITAP33076 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CIITAP33076 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CIITAP33076 CA12-203ENST00000422263 2556 ntTSL 2 BASIC18.59■□□□□ 0.57
CIITAP33076 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
CIITAP33076 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CIITAP33076 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
CIITAP33076 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CIITAP33076 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC18.59■□□□□ 0.57
CIITAP33076 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
CIITAP33076 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC18.59■□□□□ 0.57
CIITAP33076 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CIITAP33076 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC18.59■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms