Protein–RNA interactions for Protein: P19447

ERCC3, TFIIH basal transcription factor complex helicase XPB subunit, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3P19447 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC19.19■□□□□ 0.66
ERCC3P19447 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
ERCC3P19447 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
ERCC3P19447 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
ERCC3P19447 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
ERCC3P19447 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
ERCC3P19447 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
ERCC3P19447 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC19.19■□□□□ 0.66
ERCC3P19447 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC19.19■□□□□ 0.66
ERCC3P19447 FAM207CP-201ENST00000443486 507 ntBASIC19.19■□□□□ 0.66
ERCC3P19447 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC19.19■□□□□ 0.66
ERCC3P19447 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC19.19■□□□□ 0.66
ERCC3P19447 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC19.19■□□□□ 0.66
ERCC3P19447 CYP2A7P1-201ENST00000595391 815 ntBASIC19.19■□□□□ 0.66
ERCC3P19447 AC008761.3-201ENST00000624803 892 ntBASIC19.19■□□□□ 0.66
ERCC3P19447 HFE2-206ENST00000634927 506 ntTSL 4 BASIC19.19■□□□□ 0.66
ERCC3P19447 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
ERCC3P19447 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
ERCC3P19447 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC19.19■□□□□ 0.66
ERCC3P19447 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
ERCC3P19447 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC19.19■□□□□ 0.66
ERCC3P19447 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
ERCC3P19447 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
ERCC3P19447 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
ERCC3P19447 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
ERCC3P19447 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC19.18■□□□□ 0.66
ERCC3P19447 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
ERCC3P19447 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
ERCC3P19447 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC19.18■□□□□ 0.66
ERCC3P19447 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
ERCC3P19447 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC19.18■□□□□ 0.66
ERCC3P19447 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC19.18■□□□□ 0.66
ERCC3P19447 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
ERCC3P19447 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC19.18■□□□□ 0.66
ERCC3P19447 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
ERCC3P19447 CDK2AP2P3-201ENST00000422476 372 ntBASIC19.18■□□□□ 0.66
ERCC3P19447 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC19.18■□□□□ 0.66
ERCC3P19447 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC19.18■□□□□ 0.66
ERCC3P19447 RBM7-207ENST00000544582 692 ntTSL 3 BASIC19.18■□□□□ 0.66
ERCC3P19447 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC19.18■□□□□ 0.66
ERCC3P19447 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
ERCC3P19447 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC19.18■□□□□ 0.66
ERCC3P19447 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
ERCC3P19447 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC19.18■□□□□ 0.66
ERCC3P19447 SLC9A3P2-201ENST00000447821 2021 ntBASIC19.18■□□□□ 0.66
ERCC3P19447 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC19.18■□□□□ 0.66
ERCC3P19447 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC19.18■□□□□ 0.66
ERCC3P19447 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC19.18■□□□□ 0.66
ERCC3P19447 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
ERCC3P19447 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC19.18■□□□□ 0.66
ERCC3P19447 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC19.18■□□□□ 0.66
ERCC3P19447 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
ERCC3P19447 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC19.17■□□□□ 0.66
ERCC3P19447 AC116353.5-201ENST00000638148 1699 ntBASIC19.17■□□□□ 0.66
ERCC3P19447 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
ERCC3P19447 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
ERCC3P19447 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC19.17■□□□□ 0.66
ERCC3P19447 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
ERCC3P19447 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
ERCC3P19447 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
ERCC3P19447 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC19.17■□□□□ 0.66
ERCC3P19447 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
ERCC3P19447 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
ERCC3P19447 CES3-203ENST00000543856 3178 ntTSL 2 BASIC19.17■□□□□ 0.66
ERCC3P19447 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC19.17■□□□□ 0.66
ERCC3P19447 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
ERCC3P19447 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
ERCC3P19447 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
ERCC3P19447 AC005034.1-201ENST00000426657 489 ntBASIC19.17■□□□□ 0.66
ERCC3P19447 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC19.17■□□□□ 0.66
ERCC3P19447 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
ERCC3P19447 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC19.17■□□□□ 0.66
ERCC3P19447 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
ERCC3P19447 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
ERCC3P19447 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC19.17■□□□□ 0.66
ERCC3P19447 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC19.17■□□□□ 0.66
ERCC3P19447 AL035252.4-201ENST00000624174 288 ntBASIC19.17■□□□□ 0.66
ERCC3P19447 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
ERCC3P19447 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
ERCC3P19447 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
ERCC3P19447 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC19.17■□□□□ 0.66
ERCC3P19447 AL021920.2-201ENST00000624828 1351 ntBASIC19.17■□□□□ 0.66
ERCC3P19447 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC19.17■□□□□ 0.66
ERCC3P19447 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
ERCC3P19447 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC19.17■□□□□ 0.66
ERCC3P19447 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC19.17■□□□□ 0.66
ERCC3P19447 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
ERCC3P19447 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
ERCC3P19447 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
ERCC3P19447 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
ERCC3P19447 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
ERCC3P19447 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
ERCC3P19447 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
ERCC3P19447 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
ERCC3P19447 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC19.16■□□□□ 0.66
ERCC3P19447 AD000864.1-201ENST00000624076 2295 ntBASIC19.16■□□□□ 0.66
ERCC3P19447 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC19.16■□□□□ 0.66
ERCC3P19447 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC19.16■□□□□ 0.66
ERCC3P19447 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
ERCC3P19447 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms