Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
VCANP13611 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC16.88■□□□□ 0.29
VCANP13611 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC16.87■□□□□ 0.29
VCANP13611 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
VCANP13611 UBL4A-201ENST00000369653 711 ntTSL 3 BASIC16.87■□□□□ 0.29
VCANP13611 HNRNPA1P13-201ENST00000510646 963 ntBASIC16.87■□□□□ 0.29
VCANP13611 PGRMC2-206ENST00000512483 1144 ntTSL 5 BASIC16.87■□□□□ 0.29
VCANP13611 LINC01629-201ENST00000553613 581 ntTSL 4 BASIC16.87■□□□□ 0.29
VCANP13611 SSTR5-AS1-201ENST00000565992 575 ntTSL 4 BASIC16.87■□□□□ 0.29
VCANP13611 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC16.87■□□□□ 0.29
VCANP13611 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
VCANP13611 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC16.87■□□□□ 0.29
VCANP13611 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
VCANP13611 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC16.87■□□□□ 0.29
VCANP13611 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC16.87■□□□□ 0.29
VCANP13611 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
VCANP13611 IMPDH1P4-201ENST00000445028 1534 ntBASIC16.87■□□□□ 0.29
VCANP13611 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC16.87■□□□□ 0.29
VCANP13611 NUDT1-201ENST00000339737 698 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
VCANP13611 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC16.87■□□□□ 0.29
VCANP13611 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC16.87■□□□□ 0.29
VCANP13611 NDUFB11-202ENST00000377811 1388 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
VCANP13611 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
VCANP13611 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC16.87■□□□□ 0.29
VCANP13611 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
VCANP13611 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
VCANP13611 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC16.87■□□□□ 0.29
VCANP13611 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC16.87■□□□□ 0.29
VCANP13611 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
VCANP13611 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC16.86■□□□□ 0.29
VCANP13611 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VCANP13611 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VCANP13611 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VCANP13611 LINC01229-204ENST00000568751 720 ntTSL 3 BASIC16.86■□□□□ 0.29
VCANP13611 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VCANP13611 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VCANP13611 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC16.86■□□□□ 0.29
VCANP13611 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VCANP13611 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VCANP13611 AL645941.3-201ENST00000580587 577 ntTSL 4 BASIC16.86■□□□□ 0.29
VCANP13611 DIABLO-201ENST00000267169 1316 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
VCANP13611 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
VCANP13611 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VCANP13611 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VCANP13611 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VCANP13611 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC16.86■□□□□ 0.29
VCANP13611 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
VCANP13611 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
VCANP13611 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
VCANP13611 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
VCANP13611 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VCANP13611 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
VCANP13611 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC16.86■□□□□ 0.29
VCANP13611 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
VCANP13611 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VCANP13611 C12orf76-207ENST00000549724 1302 ntTSL 5 BASIC16.86■□□□□ 0.29
VCANP13611 AC093151.3-202ENST00000445073 709 ntTSL 3 BASIC16.86■□□□□ 0.29
VCANP13611 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC16.86■□□□□ 0.29
VCANP13611 AL445288.1-201ENST00000610846 654 ntTSL 4 BASIC16.86■□□□□ 0.29
VCANP13611 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
VCANP13611 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC16.86■□□□□ 0.29
VCANP13611 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
VCANP13611 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
VCANP13611 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC16.85■□□□□ 0.29
VCANP13611 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC16.85■□□□□ 0.29
VCANP13611 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
VCANP13611 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
VCANP13611 CHCHD2-201ENST00000395422 901 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
VCANP13611 AL442647.2-201ENST00000429864 857 ntBASIC16.85■□□□□ 0.29
VCANP13611 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC16.85■□□□□ 0.29
VCANP13611 GLYCTK-204ENST00000471180 992 ntTSL 2 BASIC16.85■□□□□ 0.29
VCANP13611 CFL1-206ENST00000527344 962 ntTSL 2 BASIC16.85■□□□□ 0.29
VCANP13611 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
VCANP13611 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
VCANP13611 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC16.85■□□□□ 0.29
VCANP13611 FBXL12-204ENST00000586469 544 ntTSL 2 BASIC16.85■□□□□ 0.29
VCANP13611 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC16.85■□□□□ 0.29
VCANP13611 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
VCANP13611 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
VCANP13611 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
VCANP13611 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
VCANP13611 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC16.85■□□□□ 0.29
VCANP13611 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
VCANP13611 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC16.85■□□□□ 0.29
VCANP13611 STK4-201ENST00000372801 2038 ntTSL 2 BASIC16.85■□□□□ 0.29
VCANP13611 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC16.85■□□□□ 0.29
VCANP13611 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
VCANP13611 SF3B5-201ENST00000367569 693 ntAPPRIS P1 BASIC16.85■□□□□ 0.29
VCANP13611 PUS10-202ENST00000398658 1227 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
VCANP13611 LINC01237-201ENST00000415434 573 ntTSL 4 BASIC16.85■□□□□ 0.29
VCANP13611 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC16.85■□□□□ 0.29
VCANP13611 AC246817.2-203ENST00000517357 569 ntTSL 4 BASIC16.85■□□□□ 0.29
VCANP13611 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC16.85■□□□□ 0.29
VCANP13611 C12orf73-211ENST00000553183 660 ntAPPRIS P1 TSL 3 BASIC16.85■□□□□ 0.29
VCANP13611 MIR3147-201ENST00000577811 66 ntBASIC16.85■□□□□ 0.29
VCANP13611 EIF5AP2-201ENST00000585668 1047 ntBASIC16.85■□□□□ 0.29
VCANP13611 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC16.85■□□□□ 0.29
VCANP13611 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
VCANP13611 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
VCANP13611 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 71.5 ms