Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC15.78■□□□□ 0.12
PROM1O43490 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
PROM1O43490 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
PROM1O43490 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
PROM1O43490 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
PROM1O43490 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
PROM1O43490 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC15.78■□□□□ 0.12
PROM1O43490 MIR1233-2-201ENST00000408138 82 ntBASIC15.78■□□□□ 0.12
PROM1O43490 MIR1233-1-201ENST00000408722 82 ntBASIC15.78■□□□□ 0.12
PROM1O43490 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
PROM1O43490 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC15.78■□□□□ 0.12
PROM1O43490 HS6ST1P1-201ENST00000481504 1234 ntBASIC15.78■□□□□ 0.12
PROM1O43490 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC15.78■□□□□ 0.12
PROM1O43490 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC15.78■□□□□ 0.12
PROM1O43490 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC15.78■□□□□ 0.12
PROM1O43490 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC15.78■□□□□ 0.12
PROM1O43490 AC018845.2-201ENST00000568326 409 ntBASIC15.78■□□□□ 0.12
PROM1O43490 AC140113.2-201ENST00000604370 208 ntBASIC15.78■□□□□ 0.12
PROM1O43490 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC15.78■□□□□ 0.12
PROM1O43490 FAM197Y3-203ENST00000618346 717 ntBASIC15.78■□□□□ 0.12
PROM1O43490 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
PROM1O43490 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
PROM1O43490 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
PROM1O43490 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC15.78■□□□□ 0.12
PROM1O43490 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
PROM1O43490 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
PROM1O43490 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC15.78■□□□□ 0.12
PROM1O43490 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
PROM1O43490 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
PROM1O43490 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC15.78■□□□□ 0.12
PROM1O43490 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC15.78■□□□□ 0.12
PROM1O43490 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
PROM1O43490 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
PROM1O43490 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
PROM1O43490 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
PROM1O43490 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC15.78■□□□□ 0.12
PROM1O43490 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
PROM1O43490 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
PROM1O43490 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.12
PROM1O43490 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
PROM1O43490 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC15.77■□□□□ 0.12
PROM1O43490 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
PROM1O43490 AL031731.1-201ENST00000642131 2094 ntBASIC15.77■□□□□ 0.12
PROM1O43490 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
PROM1O43490 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
PROM1O43490 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC15.77■□□□□ 0.12
PROM1O43490 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.12
PROM1O43490 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC15.77■□□□□ 0.12
PROM1O43490 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
PROM1O43490 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.12
PROM1O43490 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
PROM1O43490 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
PROM1O43490 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC15.77■□□□□ 0.12
PROM1O43490 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
PROM1O43490 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
PROM1O43490 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
PROM1O43490 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
PROM1O43490 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC15.77■□□□□ 0.12
PROM1O43490 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.12
PROM1O43490 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC15.77■□□□□ 0.12
PROM1O43490 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
PROM1O43490 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC15.77■□□□□ 0.12
PROM1O43490 AC092183.1-201ENST00000469884 875 ntBASIC15.77■□□□□ 0.12
PROM1O43490 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC15.77■□□□□ 0.12
PROM1O43490 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC15.77■□□□□ 0.12
PROM1O43490 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC15.77■□□□□ 0.12
PROM1O43490 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC15.77■□□□□ 0.12
PROM1O43490 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
PROM1O43490 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC15.77■□□□□ 0.12
PROM1O43490 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC15.77■□□□□ 0.12
PROM1O43490 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC15.77■□□□□ 0.11
PROM1O43490 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC15.77■□□□□ 0.11
PROM1O43490 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC15.77■□□□□ 0.11
PROM1O43490 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
PROM1O43490 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
PROM1O43490 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
PROM1O43490 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC15.77■□□□□ 0.11
PROM1O43490 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
PROM1O43490 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC15.77■□□□□ 0.11
PROM1O43490 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC15.77■□□□□ 0.11
PROM1O43490 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC15.77■□□□□ 0.11
PROM1O43490 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
PROM1O43490 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.11
PROM1O43490 AC025580.3-201ENST00000617932 1424 ntBASIC15.77■□□□□ 0.11
PROM1O43490 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
PROM1O43490 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
PROM1O43490 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC15.76■□□□□ 0.11
PROM1O43490 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
PROM1O43490 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
PROM1O43490 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
PROM1O43490 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC15.76■□□□□ 0.11
PROM1O43490 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC15.76■□□□□ 0.11
PROM1O43490 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC15.76■□□□□ 0.11
PROM1O43490 BCAR1-209ENST00000546196 1340 ntBASIC15.76■□□□□ 0.11
PROM1O43490 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
PROM1O43490 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC15.76■□□□□ 0.11
PROM1O43490 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
PROM1O43490 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC15.76■□□□□ 0.11
PROM1O43490 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
PROM1O43490 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms