Protein–RNA interactions for Protein: H7C350

CCDC188, Coiled-coil domain-containing protein 188, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC188H7C350 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC188H7C350 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC17.29■□□□□ 0.36
CCDC188H7C350 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
CCDC188H7C350 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC188H7C350 OVCH1-AS1-204ENST00000641955 5529 ntBASIC17.29■□□□□ 0.36
CCDC188H7C350 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
CCDC188H7C350 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
CCDC188H7C350 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC17.29■□□□□ 0.36
CCDC188H7C350 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC188H7C350 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC188H7C350 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC17.29■□□□□ 0.36
CCDC188H7C350 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC188H7C350 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC188H7C350 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
CCDC188H7C350 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC17.29■□□□□ 0.36
CCDC188H7C350 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC188H7C350 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC188H7C350 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC188H7C350 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC17.29■□□□□ 0.36
CCDC188H7C350 LINC01023-201ENST00000606054 436 ntBASIC17.29■□□□□ 0.36
CCDC188H7C350 REXO1L3P-201ENST00000622202 1288 ntBASIC17.29■□□□□ 0.36
CCDC188H7C350 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC17.29■□□□□ 0.36
CCDC188H7C350 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC188H7C350 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
CCDC188H7C350 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
CCDC188H7C350 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC188H7C350 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC188H7C350 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
CCDC188H7C350 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC188H7C350 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC188H7C350 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC188H7C350 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC188H7C350 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC17.29■□□□□ 0.36
CCDC188H7C350 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC17.29■□□□□ 0.36
CCDC188H7C350 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
CCDC188H7C350 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC188H7C350 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC188H7C350 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC188H7C350 HARS-204ENST00000438307 1789 ntTSL 2 BASIC17.28■□□□□ 0.36
CCDC188H7C350 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC188H7C350 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC188H7C350 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC17.28■□□□□ 0.36
CCDC188H7C350 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC17.28■□□□□ 0.36
CCDC188H7C350 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC188H7C350 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC188H7C350 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
CCDC188H7C350 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
CCDC188H7C350 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
CCDC188H7C350 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC188H7C350 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC188H7C350 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC17.28■□□□□ 0.36
CCDC188H7C350 AP002383.4-201ENST00000442518 975 ntBASIC17.28■□□□□ 0.36
CCDC188H7C350 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC188H7C350 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC188H7C350 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC188H7C350 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC17.28■□□□□ 0.36
CCDC188H7C350 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC17.28■□□□□ 0.36
CCDC188H7C350 AC074051.2-201ENST00000565115 352 ntBASIC17.28■□□□□ 0.36
CCDC188H7C350 AL139424.1-201ENST00000607572 797 ntBASIC17.28■□□□□ 0.36
CCDC188H7C350 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
CCDC188H7C350 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC17.28■□□□□ 0.36
CCDC188H7C350 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
CCDC188H7C350 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
CCDC188H7C350 AC144831.1-201ENST00000573312 2656 ntBASIC17.28■□□□□ 0.36
CCDC188H7C350 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC188H7C350 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC17.28■□□□□ 0.36
CCDC188H7C350 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC188H7C350 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC188H7C350 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
CCDC188H7C350 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC188H7C350 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
CCDC188H7C350 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC17.27■□□□□ 0.36
CCDC188H7C350 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC17.27■□□□□ 0.36
CCDC188H7C350 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC188H7C350 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC17.27■□□□□ 0.36
CCDC188H7C350 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
CCDC188H7C350 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC17.27■□□□□ 0.36
CCDC188H7C350 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
CCDC188H7C350 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC17.27■□□□□ 0.36
CCDC188H7C350 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC188H7C350 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC188H7C350 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC188H7C350 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC17.27■□□□□ 0.36
CCDC188H7C350 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC188H7C350 AL031133.1-201ENST00000406807 723 ntBASIC17.27■□□□□ 0.36
CCDC188H7C350 LINC00265-3P-201ENST00000447588 903 ntBASIC17.27■□□□□ 0.36
CCDC188H7C350 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC17.27■□□□□ 0.36
CCDC188H7C350 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC17.27■□□□□ 0.36
CCDC188H7C350 AP002414.4-201ENST00000589764 1148 ntBASIC17.27■□□□□ 0.36
CCDC188H7C350 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC17.27■□□□□ 0.36
CCDC188H7C350 AC064862.7-201ENST00000604520 867 ntBASIC17.27■□□□□ 0.36
CCDC188H7C350 AC066615.1-201ENST00000640911 628 ntBASIC17.27■□□□□ 0.36
CCDC188H7C350 AF228730.7-201ENST00000641842 219 ntBASIC17.27■□□□□ 0.36
CCDC188H7C350 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC188H7C350 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC17.27■□□□□ 0.36
CCDC188H7C350 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC17.27■□□□□ 0.36
CCDC188H7C350 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC17.27■□□□□ 0.35
CCDC188H7C350 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CCDC188H7C350 AC073347.1-201ENST00000421633 2643 ntBASIC17.27■□□□□ 0.35
CCDC188H7C350 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC17.27■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms