Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
VPS4AQ9UN37 METTL26-205ENST00000397666 726 ntTSL 2 BASIC16.16■□□□□ 0.18
VPS4AQ9UN37 AC254562.1-201ENST00000417586 456 ntBASIC16.16■□□□□ 0.18
VPS4AQ9UN37 AL020989.1-201ENST00000422979 469 ntBASIC16.16■□□□□ 0.18
VPS4AQ9UN37 AL645939.2-201ENST00000427340 991 ntBASIC16.16■□□□□ 0.18
VPS4AQ9UN37 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
VPS4AQ9UN37 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC16.16■□□□□ 0.18
VPS4AQ9UN37 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC16.16■□□□□ 0.18
VPS4AQ9UN37 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC16.16■□□□□ 0.18
VPS4AQ9UN37 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
VPS4AQ9UN37 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC16.16■□□□□ 0.18
VPS4AQ9UN37 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
VPS4AQ9UN37 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VPS4AQ9UN37 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VPS4AQ9UN37 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC16.16■□□□□ 0.18
VPS4AQ9UN37 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC16.16■□□□□ 0.18
VPS4AQ9UN37 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VPS4AQ9UN37 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC16.16■□□□□ 0.18
VPS4AQ9UN37 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.18
VPS4AQ9UN37 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
VPS4AQ9UN37 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
VPS4AQ9UN37 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
VPS4AQ9UN37 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VPS4AQ9UN37 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
VPS4AQ9UN37 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VPS4AQ9UN37 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC16.15■□□□□ 0.18
VPS4AQ9UN37 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
VPS4AQ9UN37 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
VPS4AQ9UN37 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
VPS4AQ9UN37 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
VPS4AQ9UN37 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
VPS4AQ9UN37 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
VPS4AQ9UN37 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
VPS4AQ9UN37 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC16.15■□□□□ 0.18
VPS4AQ9UN37 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC16.15■□□□□ 0.18
VPS4AQ9UN37 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
VPS4AQ9UN37 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
VPS4AQ9UN37 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
VPS4AQ9UN37 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC16.15■□□□□ 0.18
VPS4AQ9UN37 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
VPS4AQ9UN37 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
VPS4AQ9UN37 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
VPS4AQ9UN37 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
VPS4AQ9UN37 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
VPS4AQ9UN37 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC16.15■□□□□ 0.18
VPS4AQ9UN37 SYS1-203ENST00000414310 795 ntTSL 3 BASIC16.15■□□□□ 0.18
VPS4AQ9UN37 MCCD1P2-201ENST00000423228 335 ntBASIC16.15■□□□□ 0.18
VPS4AQ9UN37 ACTG1P4-201ENST00000425123 1122 ntBASIC16.15■□□□□ 0.18
VPS4AQ9UN37 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
VPS4AQ9UN37 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC16.15■□□□□ 0.18
VPS4AQ9UN37 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC16.15■□□□□ 0.18
VPS4AQ9UN37 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC16.15■□□□□ 0.18
VPS4AQ9UN37 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC16.15■□□□□ 0.18
VPS4AQ9UN37 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
VPS4AQ9UN37 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC16.15■□□□□ 0.18
VPS4AQ9UN37 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
VPS4AQ9UN37 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
VPS4AQ9UN37 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC16.15■□□□□ 0.18
VPS4AQ9UN37 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC16.15■□□□□ 0.18
VPS4AQ9UN37 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
VPS4AQ9UN37 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
VPS4AQ9UN37 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC16.15■□□□□ 0.18
VPS4AQ9UN37 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC16.15■□□□□ 0.18
VPS4AQ9UN37 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC16.15■□□□□ 0.18
VPS4AQ9UN37 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
VPS4AQ9UN37 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.18
VPS4AQ9UN37 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
VPS4AQ9UN37 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC16.14■□□□□ 0.18
VPS4AQ9UN37 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC16.14■□□□□ 0.18
VPS4AQ9UN37 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC16.14■□□□□ 0.18
VPS4AQ9UN37 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
VPS4AQ9UN37 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
VPS4AQ9UN37 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
VPS4AQ9UN37 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
VPS4AQ9UN37 DOC2GP-204ENST00000639052 2548 ntBASIC16.14■□□□□ 0.17
VPS4AQ9UN37 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
VPS4AQ9UN37 PCDHB17P-201ENST00000539533 2393 ntBASIC16.14■□□□□ 0.17
VPS4AQ9UN37 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC16.14■□□□□ 0.17
VPS4AQ9UN37 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
VPS4AQ9UN37 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
VPS4AQ9UN37 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
VPS4AQ9UN37 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
VPS4AQ9UN37 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
VPS4AQ9UN37 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
VPS4AQ9UN37 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
VPS4AQ9UN37 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC16.14■□□□□ 0.17
VPS4AQ9UN37 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
VPS4AQ9UN37 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC16.14■□□□□ 0.17
VPS4AQ9UN37 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC16.14■□□□□ 0.17
VPS4AQ9UN37 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC16.14■□□□□ 0.17
VPS4AQ9UN37 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC16.14■□□□□ 0.17
VPS4AQ9UN37 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
VPS4AQ9UN37 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC16.14■□□□□ 0.17
VPS4AQ9UN37 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC16.14■□□□□ 0.17
VPS4AQ9UN37 MIR4469-201ENST00000583919 79 ntBASIC16.14■□□□□ 0.17
VPS4AQ9UN37 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
VPS4AQ9UN37 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
VPS4AQ9UN37 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC16.14■□□□□ 0.17
VPS4AQ9UN37 ORC5-208ENST00000626700 344 ntTSL 3 BASIC16.14■□□□□ 0.17
VPS4AQ9UN37 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC16.14■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms