Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC21.1■□□□□ 0.97
SHANK3Q9BYB0 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SHANK3Q9BYB0 RPL28-204ENST00000431533 590 ntTSL 2 BASIC21.09■□□□□ 0.97
SHANK3Q9BYB0 RPL28-206ENST00000558752 671 ntTSL 3 BASIC21.09■□□□□ 0.97
SHANK3Q9BYB0 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC21.09■□□□□ 0.97
SHANK3Q9BYB0 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
SHANK3Q9BYB0 AC233724.13-201ENST00000598383 410 ntBASIC21.09■□□□□ 0.97
SHANK3Q9BYB0 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
SHANK3Q9BYB0 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SHANK3Q9BYB0 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC21.09■□□□□ 0.97
SHANK3Q9BYB0 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
SHANK3Q9BYB0 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
SHANK3Q9BYB0 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC21.09■□□□□ 0.97
SHANK3Q9BYB0 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC21.09■□□□□ 0.97
SHANK3Q9BYB0 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC21.09■□□□□ 0.97
SHANK3Q9BYB0 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
SHANK3Q9BYB0 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC21.09■□□□□ 0.97
SHANK3Q9BYB0 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
SHANK3Q9BYB0 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC21.09■□□□□ 0.97
SHANK3Q9BYB0 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC21.09■□□□□ 0.97
SHANK3Q9BYB0 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC21.09■□□□□ 0.97
SHANK3Q9BYB0 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
SHANK3Q9BYB0 MIR4538-201ENST00000581377 78 ntBASIC21.09■□□□□ 0.97
SHANK3Q9BYB0 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC21.09■□□□□ 0.97
SHANK3Q9BYB0 AC099795.1-202ENST00000640492 759 ntTSL 5 BASIC21.09■□□□□ 0.97
SHANK3Q9BYB0 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
SHANK3Q9BYB0 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
SHANK3Q9BYB0 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
SHANK3Q9BYB0 AC141586.5-201ENST00000624546 2050 ntBASIC21.08■□□□□ 0.97
SHANK3Q9BYB0 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
SHANK3Q9BYB0 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
SHANK3Q9BYB0 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
SHANK3Q9BYB0 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
SHANK3Q9BYB0 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
SHANK3Q9BYB0 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
SHANK3Q9BYB0 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC21.08■□□□□ 0.97
SHANK3Q9BYB0 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
SHANK3Q9BYB0 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
SHANK3Q9BYB0 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC21.08■□□□□ 0.97
SHANK3Q9BYB0 AC092506.1-202ENST00000401022 528 ntBASIC21.08■□□□□ 0.97
SHANK3Q9BYB0 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC21.08■□□□□ 0.97
SHANK3Q9BYB0 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC21.08■□□□□ 0.97
SHANK3Q9BYB0 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC21.08■□□□□ 0.97
SHANK3Q9BYB0 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
SHANK3Q9BYB0 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
SHANK3Q9BYB0 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
SHANK3Q9BYB0 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC21.08■□□□□ 0.97
SHANK3Q9BYB0 AC036164.1-201ENST00000570544 333 ntBASIC21.08■□□□□ 0.97
SHANK3Q9BYB0 AL033527.5-201ENST00000641382 801 ntBASIC21.08■□□□□ 0.97
SHANK3Q9BYB0 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC21.08■□□□□ 0.97
SHANK3Q9BYB0 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.96
SHANK3Q9BYB0 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
SHANK3Q9BYB0 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
SHANK3Q9BYB0 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC21.08■□□□□ 0.96
SHANK3Q9BYB0 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC21.08■□□□□ 0.96
SHANK3Q9BYB0 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC21.07■□□□□ 0.96
SHANK3Q9BYB0 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC21.07■□□□□ 0.96
SHANK3Q9BYB0 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC21.07■□□□□ 0.96
SHANK3Q9BYB0 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
SHANK3Q9BYB0 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC21.07■□□□□ 0.96
SHANK3Q9BYB0 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SHANK3Q9BYB0 TPT1-AS1-203ENST00000412946 744 ntTSL 3 BASIC21.07■□□□□ 0.96
SHANK3Q9BYB0 AC074338.1-201ENST00000416825 156 ntBASIC21.07■□□□□ 0.96
SHANK3Q9BYB0 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC21.07■□□□□ 0.96
SHANK3Q9BYB0 AC099548.2-209ENST00000480264 625 ntBASIC21.07■□□□□ 0.96
SHANK3Q9BYB0 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
SHANK3Q9BYB0 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
SHANK3Q9BYB0 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
SHANK3Q9BYB0 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC21.07■□□□□ 0.96
SHANK3Q9BYB0 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
SHANK3Q9BYB0 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC21.07■□□□□ 0.96
SHANK3Q9BYB0 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
SHANK3Q9BYB0 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC21.07■□□□□ 0.96
SHANK3Q9BYB0 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC21.07■□□□□ 0.96
SHANK3Q9BYB0 HLA-A-202ENST00000376806 1854 ntBASIC21.07■□□□□ 0.96
SHANK3Q9BYB0 U82695.1-201ENST00000635752 1889 ntBASIC21.07■□□□□ 0.96
SHANK3Q9BYB0 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SHANK3Q9BYB0 HNRNPA1P48-201ENST00000562726 1377 ntBASIC21.07■□□□□ 0.96
SHANK3Q9BYB0 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
SHANK3Q9BYB0 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SHANK3Q9BYB0 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC21.07■□□□□ 0.96
SHANK3Q9BYB0 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
SHANK3Q9BYB0 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC21.07■□□□□ 0.96
SHANK3Q9BYB0 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC21.07■□□□□ 0.96
SHANK3Q9BYB0 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
SHANK3Q9BYB0 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
SHANK3Q9BYB0 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
SHANK3Q9BYB0 MPV17-206ENST00000402722 827 ntTSL 3 BASIC21.07■□□□□ 0.96
SHANK3Q9BYB0 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC21.07■□□□□ 0.96
SHANK3Q9BYB0 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC21.07■□□□□ 0.96
SHANK3Q9BYB0 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC21.07■□□□□ 0.96
SHANK3Q9BYB0 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC21.07■□□□□ 0.96
SHANK3Q9BYB0 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC21.07■□□□□ 0.96
SHANK3Q9BYB0 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SHANK3Q9BYB0 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
SHANK3Q9BYB0 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
SHANK3Q9BYB0 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SHANK3Q9BYB0 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC21.06■□□□□ 0.96
SHANK3Q9BYB0 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
SHANK3Q9BYB0 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC21.06■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms