Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
PAAF1Q9BRP4 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
PAAF1Q9BRP4 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
PAAF1Q9BRP4 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC17.61■□□□□ 0.41
PAAF1Q9BRP4 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC17.61■□□□□ 0.41
PAAF1Q9BRP4 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
PAAF1Q9BRP4 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
PAAF1Q9BRP4 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
PAAF1Q9BRP4 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
PAAF1Q9BRP4 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
PAAF1Q9BRP4 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
PAAF1Q9BRP4 AC022211.2-201ENST00000585075 2527 ntBASIC17.6■□□□□ 0.41
PAAF1Q9BRP4 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
PAAF1Q9BRP4 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
PAAF1Q9BRP4 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
PAAF1Q9BRP4 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
PAAF1Q9BRP4 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
PAAF1Q9BRP4 RPL37AP1-201ENST00000412502 279 ntBASIC17.6■□□□□ 0.41
PAAF1Q9BRP4 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC17.6■□□□□ 0.41
PAAF1Q9BRP4 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC17.6■□□□□ 0.41
PAAF1Q9BRP4 TERF1P3-201ENST00000505638 1227 ntBASIC17.6■□□□□ 0.41
PAAF1Q9BRP4 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
PAAF1Q9BRP4 MAX-210ENST00000555419 765 ntTSL 5 BASIC17.6■□□□□ 0.41
PAAF1Q9BRP4 MPI-209ENST00000564003 1195 ntTSL 2 BASIC17.6■□□□□ 0.41
PAAF1Q9BRP4 AC105021.1-202ENST00000570572 669 ntBASIC17.6■□□□□ 0.41
PAAF1Q9BRP4 LITAF-210ENST00000571976 548 ntTSL 2 BASIC17.6■□□□□ 0.41
PAAF1Q9BRP4 LITAF-214ENST00000574703 486 ntTSL 2 BASIC17.6■□□□□ 0.41
PAAF1Q9BRP4 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC17.6■□□□□ 0.41
PAAF1Q9BRP4 AL133215.2-201ENST00000609242 977 ntBASIC17.6■□□□□ 0.41
PAAF1Q9BRP4 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC17.6■□□□□ 0.41
PAAF1Q9BRP4 TDG-209ENST00000544861 1387 ntTSL 2 BASIC17.6■□□□□ 0.41
PAAF1Q9BRP4 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC17.6■□□□□ 0.41
PAAF1Q9BRP4 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
PAAF1Q9BRP4 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
PAAF1Q9BRP4 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
PAAF1Q9BRP4 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
PAAF1Q9BRP4 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
PAAF1Q9BRP4 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
PAAF1Q9BRP4 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
PAAF1Q9BRP4 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
PAAF1Q9BRP4 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
PAAF1Q9BRP4 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC17.6■□□□□ 0.41
PAAF1Q9BRP4 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC17.6■□□□□ 0.41
PAAF1Q9BRP4 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
PAAF1Q9BRP4 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC17.6■□□□□ 0.41
PAAF1Q9BRP4 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
PAAF1Q9BRP4 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
PAAF1Q9BRP4 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
PAAF1Q9BRP4 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC17.59■□□□□ 0.41
PAAF1Q9BRP4 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
PAAF1Q9BRP4 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PAAF1Q9BRP4 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PAAF1Q9BRP4 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PAAF1Q9BRP4 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC17.59■□□□□ 0.41
PAAF1Q9BRP4 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC17.59■□□□□ 0.41
PAAF1Q9BRP4 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PAAF1Q9BRP4 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC17.59■□□□□ 0.41
PAAF1Q9BRP4 AL589702.1-201ENST00000641229 1509 ntBASIC17.59■□□□□ 0.41
PAAF1Q9BRP4 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC17.59■□□□□ 0.41
PAAF1Q9BRP4 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PAAF1Q9BRP4 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PAAF1Q9BRP4 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
PAAF1Q9BRP4 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
PAAF1Q9BRP4 HNRNPA3P1-201ENST00000401429 1139 ntBASIC17.59■□□□□ 0.41
PAAF1Q9BRP4 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC17.59■□□□□ 0.41
PAAF1Q9BRP4 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC17.59■□□□□ 0.41
PAAF1Q9BRP4 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC17.59■□□□□ 0.41
PAAF1Q9BRP4 PNKD-204ENST00000436005 978 ntTSL 5 BASIC17.59■□□□□ 0.41
PAAF1Q9BRP4 HNRNPA3P5-201ENST00000455201 833 ntBASIC17.59■□□□□ 0.41
PAAF1Q9BRP4 HLA-V-204ENST00000476601 1289 ntBASIC17.59■□□□□ 0.41
PAAF1Q9BRP4 SERBP1P5-201ENST00000510079 1181 ntBASIC17.59■□□□□ 0.41
PAAF1Q9BRP4 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC17.59■□□□□ 0.41
PAAF1Q9BRP4 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC17.59■□□□□ 0.41
PAAF1Q9BRP4 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC17.59■□□□□ 0.41
PAAF1Q9BRP4 AC020765.3-201ENST00000613051 740 ntBASIC17.59■□□□□ 0.41
PAAF1Q9BRP4 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC17.59■□□□□ 0.41
PAAF1Q9BRP4 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
PAAF1Q9BRP4 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PAAF1Q9BRP4 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PAAF1Q9BRP4 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
PAAF1Q9BRP4 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PAAF1Q9BRP4 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
PAAF1Q9BRP4 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PAAF1Q9BRP4 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
PAAF1Q9BRP4 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
PAAF1Q9BRP4 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
PAAF1Q9BRP4 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
PAAF1Q9BRP4 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
PAAF1Q9BRP4 RELA-227ENST00000615805 2236 ntTSL 5 BASIC17.59■□□□□ 0.41
PAAF1Q9BRP4 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
PAAF1Q9BRP4 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PAAF1Q9BRP4 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
PAAF1Q9BRP4 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
PAAF1Q9BRP4 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
PAAF1Q9BRP4 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
PAAF1Q9BRP4 GRAMD4P3-201ENST00000621665 1669 ntBASIC17.58■□□□□ 0.41
PAAF1Q9BRP4 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.41
PAAF1Q9BRP4 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.58■□□□□ 0.41
PAAF1Q9BRP4 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC17.58■□□□□ 0.41
PAAF1Q9BRP4 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms