Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC16.16■□□□□ 0.18
VPS13AQ96RL7 PFN2-215ENST00000497148 743 ntTSL 4 BASIC16.16■□□□□ 0.18
VPS13AQ96RL7 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC16.16■□□□□ 0.18
VPS13AQ96RL7 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC16.16■□□□□ 0.18
VPS13AQ96RL7 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.18
VPS13AQ96RL7 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC16.16■□□□□ 0.18
VPS13AQ96RL7 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VPS13AQ96RL7 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
VPS13AQ96RL7 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
VPS13AQ96RL7 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VPS13AQ96RL7 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VPS13AQ96RL7 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC16.16■□□□□ 0.18
VPS13AQ96RL7 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
VPS13AQ96RL7 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
VPS13AQ96RL7 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC16.16■□□□□ 0.18
VPS13AQ96RL7 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC16.16■□□□□ 0.18
VPS13AQ96RL7 AKR7A2P1-201ENST00000460134 915 ntBASIC16.16■□□□□ 0.18
VPS13AQ96RL7 AC008438.1-201ENST00000507521 549 ntTSL 2 BASIC16.16■□□□□ 0.18
VPS13AQ96RL7 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC16.16■□□□□ 0.18
VPS13AQ96RL7 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC16.16■□□□□ 0.18
VPS13AQ96RL7 AC104758.2-201ENST00000562716 483 ntTSL 3 BASIC16.16■□□□□ 0.18
VPS13AQ96RL7 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC16.16■□□□□ 0.18
VPS13AQ96RL7 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC16.16■□□□□ 0.18
VPS13AQ96RL7 ZNF596-213ENST00000640035 1163 ntTSL 5 BASIC16.16■□□□□ 0.18
VPS13AQ96RL7 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
VPS13AQ96RL7 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
VPS13AQ96RL7 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
VPS13AQ96RL7 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
VPS13AQ96RL7 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC16.15■□□□□ 0.18
VPS13AQ96RL7 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
VPS13AQ96RL7 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
VPS13AQ96RL7 FANCA-205ENST00000543736 1000 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
VPS13AQ96RL7 MIR4492-201ENST00000581627 80 ntBASIC16.15■□□□□ 0.18
VPS13AQ96RL7 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
VPS13AQ96RL7 TOP3BP1-201ENST00000420768 1380 ntBASIC16.15■□□□□ 0.18
VPS13AQ96RL7 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC16.15■□□□□ 0.18
VPS13AQ96RL7 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
VPS13AQ96RL7 KRT18P55-202ENST00000578578 1546 ntBASIC16.15■□□□□ 0.18
VPS13AQ96RL7 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC16.15■□□□□ 0.18
VPS13AQ96RL7 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
VPS13AQ96RL7 ZBTB12BP-201ENST00000314232 1122 ntBASIC16.15■□□□□ 0.18
VPS13AQ96RL7 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC16.15■□□□□ 0.18
VPS13AQ96RL7 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
VPS13AQ96RL7 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC16.15■□□□□ 0.18
VPS13AQ96RL7 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC16.15■□□□□ 0.18
VPS13AQ96RL7 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
VPS13AQ96RL7 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC16.15■□□□□ 0.18
VPS13AQ96RL7 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC16.15■□□□□ 0.18
VPS13AQ96RL7 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC16.15■□□□□ 0.18
VPS13AQ96RL7 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
VPS13AQ96RL7 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
VPS13AQ96RL7 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
VPS13AQ96RL7 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC16.14■□□□□ 0.17
VPS13AQ96RL7 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
VPS13AQ96RL7 APOA1-205ENST00000375329 927 ntTSL 2 BASIC16.14■□□□□ 0.17
VPS13AQ96RL7 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
VPS13AQ96RL7 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
VPS13AQ96RL7 AC004898.1-201ENST00000451057 766 ntBASIC16.14■□□□□ 0.17
VPS13AQ96RL7 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC16.14■□□□□ 0.17
VPS13AQ96RL7 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC16.14■□□□□ 0.17
VPS13AQ96RL7 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC16.14■□□□□ 0.17
VPS13AQ96RL7 MIR3619-201ENST00000579667 83 ntBASIC16.14■□□□□ 0.17
VPS13AQ96RL7 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC16.14■□□□□ 0.17
VPS13AQ96RL7 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
VPS13AQ96RL7 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC16.14■□□□□ 0.17
VPS13AQ96RL7 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
VPS13AQ96RL7 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
VPS13AQ96RL7 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
VPS13AQ96RL7 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
VPS13AQ96RL7 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
VPS13AQ96RL7 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
VPS13AQ96RL7 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
VPS13AQ96RL7 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
VPS13AQ96RL7 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
VPS13AQ96RL7 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC16.14■□□□□ 0.17
VPS13AQ96RL7 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
VPS13AQ96RL7 IFITM5-201ENST00000382614 736 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
VPS13AQ96RL7 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC16.14■□□□□ 0.17
VPS13AQ96RL7 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC16.14■□□□□ 0.17
VPS13AQ96RL7 AC084859.1-201ENST00000533002 670 ntTSL 4 BASIC16.14■□□□□ 0.17
VPS13AQ96RL7 TIMM17BP1-201ENST00000545713 516 ntBASIC16.14■□□□□ 0.17
VPS13AQ96RL7 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC16.14■□□□□ 0.17
VPS13AQ96RL7 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
VPS13AQ96RL7 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC16.14■□□□□ 0.17
VPS13AQ96RL7 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
VPS13AQ96RL7 AL589702.1-201ENST00000641229 1509 ntBASIC16.14■□□□□ 0.17
VPS13AQ96RL7 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC16.14■□□□□ 0.17
VPS13AQ96RL7 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
VPS13AQ96RL7 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC16.14■□□□□ 0.17
VPS13AQ96RL7 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
VPS13AQ96RL7 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
VPS13AQ96RL7 AC068587.3-201ENST00000526613 355 ntBASIC16.14■□□□□ 0.17
VPS13AQ96RL7 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC16.14■□□□□ 0.17
VPS13AQ96RL7 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
VPS13AQ96RL7 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
VPS13AQ96RL7 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
VPS13AQ96RL7 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
VPS13AQ96RL7 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC16.13■□□□□ 0.17
VPS13AQ96RL7 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
VPS13AQ96RL7 RGS10-202ENST00000369103 804 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms